Domenico Bordo

Summary

Affiliation: LILIT group
Country: Italy

Publications

  1. ncbi Crystals of GlpE, a 12 kDa sulfurtransferase from escherichia coli, display 1.06 A resolution diffraction: a preliminary report
    D Bordo
    National Institute for Cancer Research c o Advanced Biotechnology Center, Largo R Benzi 10, 16132 Genova, Italy
    Acta Crystallogr D Biol Crystallogr 56:1691-3. 2000
  2. pmc The rhodanese/Cdc25 phosphatase superfamily. Sequence-structure-function relations
    Domenico Bordo
    National Cancer Research Institute, c o Advanced Biotechnology Center, Genova, Italy
    EMBO Rep 3:741-6. 2002
  3. ncbi Expression and crystallographic characterization of the extracellular domain of human natural killer cell triggering receptor NKp46
    Marco Ponassi
    Laboratorio di Biologia Strutturale, Istituto Scientifico Tumori, Largo R Benzi 10, 16132 Genova, Italy
    Acta Crystallogr D Biol Crystallogr 59:2259-61. 2003
  4. ncbi Structure of the human NK cell triggering receptor NKp46 ectodomain
    Marco Ponassi
    Istituto Nazionale Ricerca sul Cancro, Largo R Benzi 10, 16132 Genoa, Italy
    Biochem Biophys Res Commun 309:317-23. 2003
  5. ncbi The three-dimensional structure of the human NK cell receptor NKp44, a triggering partner in natural cytotoxicity
    Claudia Cantoni
    Dipartimento di Medicina Sperimentale, Universita di Genova, Via L B Alberti 1, 16132 Genova, Italy
    Structure 11:725-34. 2003
  6. pmc Crystallization and preliminary crystallographic characterization of LmACR2, an arsenate/antimonate reductase from Leishmania major
    Davide Bisacchi
    Bioinformatics and Structural Proteomics, IST National Cancer Research Institute, Genova, Italy
    Acta Crystallogr Sect F Struct Biol Cryst Commun 62:976-9. 2006
  7. ncbi Structure and evolution of human sirtuins
    Domenico Bordo
    IRCCS Azienda Ospedaliera Universitaria San Martino IST, Istituto Nazionale per la Ricerca sul Cancro, Genova, Italy
    Curr Drug Targets 14:662-5. 2013
  8. doi Structural analysis of protein-ligand interactions: the binding of endogenous compounds and of synthetic drugs
    Anna M Gallina
    IRCCS Az Ospedaliera Universitaria S Martino IST, National Cancer Research Institute, Largo R Benzi, 10, 16132, Genova, Italy
    J Mol Recognit 27:65-72. 2014
  9. doi PLI: a web-based tool for the comparison of protein-ligand interactions observed on PDB structures
    Anna Maria Gallina
    IRCCS Azienda Ospedaliera Universitaria San Martino IST Istituto Nazionale Ricerca sul Cancro, 16132 Genova, Italy
    Bioinformatics 29:395-7. 2013
  10. ncbi Inhibition of Azotobacter vinelandii rhodanese by NO-donors
    Andrea Spallarossa
    Dipartimento di Scienze Farmaceutiche, Universita di Genova, Via Benedetto XV 3, I 16132 Genoa, Italy
    Biochem Biophys Res Commun 306:1002-7. 2003

Collaborators

Detail Information

Publications13

  1. ncbi Crystals of GlpE, a 12 kDa sulfurtransferase from escherichia coli, display 1.06 A resolution diffraction: a preliminary report
    D Bordo
    National Institute for Cancer Research c o Advanced Biotechnology Center, Largo R Benzi 10, 16132 Genova, Italy
    Acta Crystallogr D Biol Crystallogr 56:1691-3. 2000
    ..The GlpE crystals display very high resolution diffraction; a 1.06 A data set was collected using synchrotron radiation (lambda = 0.9102 A) with an overall completeness of 99.6%...
  2. pmc The rhodanese/Cdc25 phosphatase superfamily. Sequence-structure-function relations
    Domenico Bordo
    National Cancer Research Institute, c o Advanced Biotechnology Center, Genova, Italy
    EMBO Rep 3:741-6. 2002
    ..Furthermore, the frequently observed association of catalytically inactive rhodanese modules with other protein domains suggests a distinct regulatory role for these inactive domains, possibly in connection with signaling...
  3. ncbi Expression and crystallographic characterization of the extracellular domain of human natural killer cell triggering receptor NKp46
    Marco Ponassi
    Laboratorio di Biologia Strutturale, Istituto Scientifico Tumori, Largo R Benzi 10, 16132 Genova, Italy
    Acta Crystallogr D Biol Crystallogr 59:2259-61. 2003
    ..Crystals of the NKp46 extracellular region belong to the hexagonal space group P6(1) (or P6(5)), with unit-cell parameters a = b = 85.48, c = 59.91 A, gamma = 120 degrees; the asymmetric unit contains one protein chain (197 amino acids)...
  4. ncbi Structure of the human NK cell triggering receptor NKp46 ectodomain
    Marco Ponassi
    Istituto Nazionale Ricerca sul Cancro, Largo R Benzi 10, 16132 Genoa, Italy
    Biochem Biophys Res Commun 309:317-23. 2003
    ....
  5. ncbi The three-dimensional structure of the human NK cell receptor NKp44, a triggering partner in natural cytotoxicity
    Claudia Cantoni
    Dipartimento di Medicina Sperimentale, Universita di Genova, Via L B Alberti 1, 16132 Genova, Italy
    Structure 11:725-34. 2003
    ..The data presented are a first step toward understanding the molecular basis for ligand recognition by natural cytotoxicity receptors, whose key role in the immune system is established, but whose cellular ligands are still elusive...
  6. pmc Crystallization and preliminary crystallographic characterization of LmACR2, an arsenate/antimonate reductase from Leishmania major
    Davide Bisacchi
    Bioinformatics and Structural Proteomics, IST National Cancer Research Institute, Genova, Italy
    Acta Crystallogr Sect F Struct Biol Cryst Commun 62:976-9. 2006
    ..0, c = 86.1 A and a = b = 111.0, c = 175.6 A, respectively. At a synchrotron beamline, the diffraction pattern extended to a resolution limit of 1.99 A...
  7. ncbi Structure and evolution of human sirtuins
    Domenico Bordo
    IRCCS Azienda Ospedaliera Universitaria San Martino IST, Istituto Nazionale per la Ricerca sul Cancro, Genova, Italy
    Curr Drug Targets 14:662-5. 2013
    ....
  8. doi Structural analysis of protein-ligand interactions: the binding of endogenous compounds and of synthetic drugs
    Anna M Gallina
    IRCCS Az Ospedaliera Universitaria S Martino IST, National Cancer Research Institute, Largo R Benzi, 10, 16132, Genova, Italy
    J Mol Recognit 27:65-72. 2014
    ..The trends identified in this study may provide an useful guideline in the process of drug design and lead optimization...
  9. doi PLI: a web-based tool for the comparison of protein-ligand interactions observed on PDB structures
    Anna Maria Gallina
    IRCCS Azienda Ospedaliera Universitaria San Martino IST Istituto Nazionale Ricerca sul Cancro, 16132 Genova, Italy
    Bioinformatics 29:395-7. 2013
    ....
  10. ncbi Inhibition of Azotobacter vinelandii rhodanese by NO-donors
    Andrea Spallarossa
    Dipartimento di Scienze Farmaceutiche, Universita di Genova, Via Benedetto XV 3, I 16132 Genoa, Italy
    Biochem Biophys Res Commun 306:1002-7. 2003
    ..These results indicate that RhdA inhibition occurs via NO-mediated S-nitrosylation of the unique Cys230 catalytic residue...
  11. ncbi SseA, a 3-mercaptopyruvate sulfurtransferase from Escherichia coli: crystallization and preliminary crystallographic data
    Andrea Spallarossa
    Dipartimento di Fisica, INFM, Centro di Eccellenza per la Ricerca Biomedica, Universita di Genova, Via Dodecaneso 33, 16146 Genova, Italy
    Acta Crystallogr D Biol Crystallogr 59:168-70. 2003
    ..In this framework, the forthcoming crystal structure analysis of SseA will be based on the tetragonal crystal form (space group P4(1) or P4(3)) reported here, with unit-cell parameters a = b = 150.2, c = 37.9 A...
  12. ncbi The "rhodanese" fold and catalytic mechanism of 3-mercaptopyruvate sulfurtransferases: crystal structure of SseA from Escherichia coli
    Andrea Spallarossa
    Dipartimento di Fisica INFM, Centro di Eccellenza per la Ricerca Biomedica, Universita di Genova Via Dodecaneso 33, 16146 Genoa, Italy
    J Mol Biol 335:583-93. 2004
    ....
  13. ncbi Crystallization and preliminary crystallographic characterization of the extracellular Ig-like domain of human natural killer cell activating receptor NKp44
    Claudia Cantoni
    Dipartimento di Medicina Sperimentale, Universita di Genova, Italy
    Acta Crystallogr D Biol Crystallogr 58:1843-5. 2002
    ..4, c = 197.2 A, gamma = 120 degrees. Evaluation of the crystal packing parameter suggests the presence of one molecule (13.8 kDa) per asymmetric unit, with a solvent volume of 67%...