Riccardo Velasco

Summary

Affiliation: IASMA Research Center
Country: Italy

Publications

  1. pmc Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation
    Judson A Ward
    Department of Horticulture, Cornell University, New York State Agricultural Experiment Station, Geneva, New York 14456, USA
    BMC Genomics 14:2. 2013
  2. pmc The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L
    Philip R Young
    Institute for Wine Biotechnology, Department of Viticulture and Oenology, Stellenbosch University, Matieland, 7602, South Africa
    BMC Genomics 13:243. 2012
  3. pmc Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array
    Laima Antanaviciute
    East Malling Research EMR, New Road, East Malling, Kent ME19 6BJ, UK
    BMC Genomics 13:203. 2012
  4. pmc Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Genomics 13:129. 2012
  5. pmc Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms
    Marco Falda
    Department of Molecular Medicine, University of Padova, Via U Bassi 58 B, 35121, Padova, Italy
    BMC Bioinformatics 13:S14. 2012
  6. doi request reprint The genome of the domesticated apple (Malus × domestica Borkh.)
    Riccardo Velasco
    Istituto Agrario San Michele all Adige Research and Innovation Centre, Foundation Edmund Mach, Trento, Italy
    Nat Genet 42:833-9. 2010
  7. pmc A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
    Riccardo Velasco
    IASMA Research Center, San Michele all Adige, Trento, Italy
    PLoS ONE 2:e1326. 2007
  8. pmc Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses
    Giulia Malacarne
    Fondazione Edmund Mach, Research and Innovation Center, Via E, Mach 1, 38010 San Michele all Adige, Italy
    BMC Plant Biol 11:114. 2011
  9. pmc Dominance induction of fruitlet shedding in Malus x domestica (L. Borkh): molecular changes associated with polar auxin transport
    Valeriano Dal Cin
    Department of Environmental Agronomy and Crop Science, University of Padova, Viale dell Universita 16, 35020 Legnaro Padova, Italy
    BMC Plant Biol 9:139. 2009
  10. pmc A SNP transferability survey within the genus Vitis
    Silvia Vezzulli
    IASMA Research Centre, Via E, Mach 1, 38010 San Michele all Adige TN, Italy
    BMC Plant Biol 8:128. 2008

Collaborators

Detail Information

Publications23

  1. pmc Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation
    Judson A Ward
    Department of Horticulture, Cornell University, New York State Agricultural Experiment Station, Geneva, New York 14456, USA
    BMC Genomics 14:2. 2013
    ..Imputation can reduce the number of missing values and can correct genotyping errors, but current methods of imputation require a reference genome and thus are not an option for most species...
  2. pmc The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L
    Philip R Young
    Institute for Wine Biotechnology, Department of Viticulture and Oenology, Stellenbosch University, Matieland, 7602, South Africa
    BMC Genomics 13:243. 2012
    ....
  3. pmc Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array
    Laima Antanaviciute
    East Malling Research EMR, New Road, East Malling, Kent ME19 6BJ, UK
    BMC Genomics 13:203. 2012
    ..To test the applicability of the array for mapping in diverse Malus genotypes, we applied the array to the construction of a SNP-based linkage map of an apple rootstock progeny...
  4. pmc Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Genomics 13:129. 2012
    ..Recently the whole genome of three crop species, peach, apple and strawberry, which belong to different genera of the Rosaceae family, have been sequenced, allowing in-depth comparison of these genomes...
  5. pmc Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms
    Marco Falda
    Department of Molecular Medicine, University of Padova, Via U Bassi 58 B, 35121, Padova, Italy
    BMC Bioinformatics 13:S14. 2012
    ..In this scenario, the Gene Ontology has provided the means to standardize the annotation classification with a structured vocabulary which can be easily exploited by computational methods...
  6. doi request reprint The genome of the domesticated apple (Malus × domestica Borkh.)
    Riccardo Velasco
    Istituto Agrario San Michele all Adige Research and Innovation Centre, Foundation Edmund Mach, Trento, Italy
    Nat Genet 42:833-9. 2010
    ....
  7. pmc A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
    Riccardo Velasco
    IASMA Research Center, San Michele all Adige, Trento, Italy
    PLoS ONE 2:e1326. 2007
    ..In this paper a high quality draft genome sequence of a cultivated clone of V. vinifera Pinot Noir is presented...
  8. pmc Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses
    Giulia Malacarne
    Fondazione Edmund Mach, Research and Innovation Center, Via E, Mach 1, 38010 San Michele all Adige, Italy
    BMC Plant Biol 11:114. 2011
    ..viticola of the Merzling × Teroldego cross by profiling the stilbenoid content of the leaves of an entire population and the transcriptome of resistant and susceptible individuals following infection...
  9. pmc Dominance induction of fruitlet shedding in Malus x domestica (L. Borkh): molecular changes associated with polar auxin transport
    Valeriano Dal Cin
    Department of Environmental Agronomy and Crop Science, University of Padova, Viale dell Universita 16, 35020 Legnaro Padova, Italy
    BMC Plant Biol 9:139. 2009
    ..The response to these hormones is controlled by transcription regulators such as Aux/IAA and ARR, whereas auxin transport is controlled by influx and efflux carriers...
  10. pmc A SNP transferability survey within the genus Vitis
    Silvia Vezzulli
    IASMA Research Centre, Via E, Mach 1, 38010 San Michele all Adige TN, Italy
    BMC Plant Biol 8:128. 2008
    ..cultivar Pinot Noir (clone ENTAV 115) genome gave rise to several thousand polymorphisms and offers a good model to study the transferability of its degree of polymorphism to other individuals of the same species and within the genus...
  11. pmc Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs
    Barbara Lazzari
    Technology Park Lodi, Localita Cascina Codazza, Via Einstein, 26900 Lodi, Italy
    BMC Plant Biol 9:82. 2009
    ..The application is available at http://www.itb.cnr.it/ptp/grapemirna/...
  12. pmc Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison
    Stefania Pilati
    Department of Genetics and Molecular Biology IASMA Research Center, Via E, Mach 1, 38010 S, Michele a Adige TN, Italy
    BMC Genomics 8:428. 2007
    ..Despite this relevance, little is known about the transcriptional changes and the regulatory circuits underlying the biochemical and physical changes occurring during berry development...
  13. pmc Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar
    Simone Scalabrin
    Istituto di Genomica Applicata, Parco Scientifico e Tecnologico di Udine Luigi Danieli, Via J Linussio 51, 33100 Udine, Italy
    BMC Genomics 11:204. 2010
    ..A physical map is essential to positionally clone such genes and instrumental in a genome sequencing project...
  14. pmc Grapevine cell early activation of specific responses to DIMEB, a resveratrol elicitor
    Anita Zamboni
    IASMA Research and Innovation Center, Fondazione Edmund Mach, S Michele a Adige I 38010, Italy
    BMC Genomics 10:363. 2009
    ..Among these, modified beta-cyclodextrins seem to act as true elicitors inducing strong production of the stilbene resveratrol...
  15. pmc Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family
    Eudald Illa
    IRTA, Centre de Recerca en Agrigenòmica CSIC IRTA UAB, Carretera de Cabrils Km 2, 08348 Cabrils Barcelona, Spain
    BMC Evol Biol 11:9. 2011
    ..The growing body of genomics resources and sequence data for both Prunus and Fragaria permits detailed comparisons between these genera and the recently released Malus × domestica genome sequence...
  16. pmc SNP high-throughput screening in grapevine using the SNPlex genotyping system
    Massimo Pindo
    IASMA Research Center, Via E, Mach, 1 I 38010 San Michele all Adige, Italy
    BMC Plant Biol 8:12. 2008
    ..However, following completion of the sequence of the highly heterozygous genome of Pinot Noir, it has been possible to identify millions of electronic SNPs (eSNPs) thus providing a valuable source for high-throughput genotyping methods...
  17. doi request reprint Profiling of resveratrol oligomers, important stress metabolites, accumulating in the leaves of hybrid Vitis vinifera (Merzling × Teroldego) genotypes infected with Plasmopara viticola
    Fulvio Mattivi
    Fondazione Edmund Mach, IASMA Research and Innovation Centre, San Michele all Adige, Italy
    J Agric Food Chem 59:5364-75. 2011
    ..The isolation of a dimer deriving from the condensation of (+)-catechin with trans-caffeic acid also indicated that other preformed phenolics are structurally modified in tissues infected with P. viticola...
  18. pmc Deconstruction of the (paleo)polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes
    Giulia Malacarne
    IASMA Research and Innovation Centre, Fondazione Edmund Mach, S Michele all Adige, Trento, Italy
    PLoS ONE 7:e29762. 2012
    ..Chromosome number variation in the Vitaceae and related families, and the gap between the time of eudicot radiation and the age of Vitaceae fossils, are accounted for by our hypothesis...
  19. pmc A candidate gene based approach validates Md-PG1 as the main responsible for a QTL impacting fruit texture in apple (Malus x domestica Borkh)
    Sara Longhi
    Research and Innovation Centre, Foundation Edmund Mach, Via Mach 1, 38010, San Michele all Adige, TN, Italy
    BMC Plant Biol 13:37. 2013
    ..In apple, Md-PG1, a key gene belonging to the polygalacturonase gene family, was mapped on chromosome 10 and co-localized within the statistical interval of a major hot spot QTL associated to several fruit texture sub-phenotypes...
  20. doi request reprint Comprehensive QTL mapping survey dissects the complex fruit texture physiology in apple (Malus x domestica Borkh.)
    Sara Longhi
    Research and Innovation Centre, Foundation Edmund Mach, Via Mach 1, I 38010 San Michele all Adige, Trento, Italy
    J Exp Bot 63:1107-21. 2012
    ..The mining of the apple genome allowed the discovery of the gene inventory underlying each QTL, and functional profile assessment unravelled specific gene expression patterns of these candidate genes...
  21. pmc A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigs
    Michela Troggio
    IASMA Research Center, Via E Mach 1, 38010 San Michele all Adige TN, Italy
    Genetics 176:2637-50. 2007
    ..The map provides the most comprehensive view of the Vitis genome reported to date and will be relevant for future studies on structural and functional genomics and genetic improvement...
  22. doi request reprint Ripening and genotype control stilbene accumulation in healthy grapes
    Pamela Gatto
    IASMA Research Center, Via E Mach 1, 38010 San Michele all Adige TN, Italy
    J Agric Food Chem 56:11773-85. 2008
    ....
  23. doi request reprint The 1-deoxy-D: -xylulose 5-phosphate synthase gene co-localizes with a major QTL affecting monoterpene content in grapevine
    Juri Battilana
    Department of Genetics and Molecular Biology, IASMA Research Center, Fondazione Edmund Mach, 38010 San Michele all Adige, Italy
    Theor Appl Genet 118:653-69. 2009
    ..Further research on the functional significance of these associations might help to understand the genetic control of Muscat flavor...