Research Topics
| Marilyn SafranSummaryAffiliation: Weizmann Institute of Science Country: Israel Publications
| Collaborators
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Detail Information
Publications
GeneAnnot: comprehensive two-way linking between oligonucleotide array probesets and GeneCards genesVered Chalifa-Caspi
Department of Biological Services, Weizmann Institute of Science, Rehovot, Israel
Bioinformatics 20:1457-8. 2004..AVAILABILITY: http://genecards.weizmann.ac.il/geneannot/ SUPPLEMENTARY INFORMATION: Program description and statistics http://genecards.weizmann.ac.il/geneannot/DOC/index.html..
Novel definition files for human GeneChips based on GeneAnnotFrancesco Ferrari
Department of Biomedical Sciences, University of Modena and Reggio Emilia, via G Campi 287, 41100, Modena, Italy
BMC Bioinformatics 8:446. 2007..In the current generation of Affymetrix human GeneChips, most probesets include probes matching transcripts from more than one gene and probes which do not match any transcribed sequence...- GeneCards Version 3: the human gene integratorMarilyn Safran
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
Database (Oxford) 2010:baq020. 2010..Finally, we delineate examples of applications and collaborations that have benefited from the GeneCards suite. Database URL: www.genecards.org... - GeneCards 2002: towards a complete, object-oriented, human gene compendiumMarilyn Safran
Departments of Molecular Genetics Biological Services Bioinformatics Unit Molecular Cell Biology, The Weizmann Institute of Science, Rehovot, Israel
Bioinformatics 18:1542-3. 2002..restructured software using object-oriented Perl, migration to schema-driven XML, and (c). pilot studies, introducing methods to produce cards for novel and predicted genes... - Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDEMarilyn Safran
Department of Biological Services Bioinformatics Unit, The Weizmann Institute of Science, 76100 Rehovot, Israel
Nucleic Acids Res 31:142-6. 2003..weizmann.ac.il/HORDE). The synergistic relationships amongst these efforts have positively impacted the quality, quantity and usefulness of the GeneCards gene compendium... - Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specificationItai Yanai
Department of Molecular Genetics, Weizmann Institute of Science 76100 Rehovot, Israel
Bioinformatics 21:650-9. 2005..AVAILABILITY: All data and analyses are publically available at the GeneNote website, http://genecards.weizmann.ac.il/genenote/ and, GEO accession GSE803. CONTACT: SUPPLEMENTARY INFORMATION: Four tables available at the above site... - GIFtS: annotation landscape analysis with GeneCardsArye Harel
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
BMC Bioinformatics 10:348. 2009..GeneCards is a gene-centric compendium of rich annotative information for over 50,000 human gene entries, building upon 68 data sources, including Gene Ontology (GO), pathways, interactions, phenotypes, publications and many more... - GeneLoc: exon-based integration of human genome mapsNaomi Rosen
Weizmann Institute of Science, Rehovot, Israel
Bioinformatics 19:i222-4. 2003..RESULTS: GeneLoc, software adjunct to GeneCards and UDB, integrates gene lists by comparing genomic coordinates at the exon level and assigns unique and meaningful identifiers to each gene... - GeneTide--Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databasesMaxim Shklar
Department of Molecular Genetics, The Weizmann Institute of Science, Rehovot 76100, Israel
Nucleic Acids Res 33:D556-61. 2005..3 of GeneTide, are further annotated with various parameters, including splicing evidence and expression data extracted from the GeneNote database, to determine their validity as possible de novo genes... 
GeneDecks: paralog hunting and gene-set distillation with GeneCards annotationGil Stelzer
Departments of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel
OMICS 13:477-87. 2009..GeneDecks enables the elucidation of unsuspected putative functional paralogs, and a refined scrutiny of various gene-sets (e.g., from high-throughput experiments) for discovering relevant biological patterns...- In-silico human genomics with GeneCardsGil Stelzer
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, 76100, Israel
Hum Genomics 5:709-17. 2011.... - MalaCards: an integrated compendium for diseases and their annotationNoa Rappaport
Department of Molecular Genetics, Weizmann Institute of Science, 234 Hertzel St Rehovot, 76100, Israel
Database (Oxford) 2013:bat018. 2013..Work in progress includes hierarchical malady classification, ontological mapping and disease set analyses, striving to make MalaCards an even more effective tool for biomedical research. Database URL: http://www.malacards.org/.. - Non-redundant compendium of human ncRNA genes in GeneCardsFrida Belinky
Department of Molecular Genetics, The Weizmann Institute of Science, Rehovot 76100, Israel
Bioinformatics 29:255-61. 2013..Non-coding RNA (ncRNA) genes are increasingly acknowledged for their importance in the human genome. However, there is no comprehensive non-redundant database for all such human genes... - GeneNote: whole genome expression profiles in normal human tissuesOrit Shmueli
Department of Molecular Genetics, The Weizmann Institute of Science, 76100 Rehovot, Israel
C R Biol 326:1067-72. 2003..The data is posted in GeneNote (http://genecards.weizmann.ac.il/genenote/), a widely used compendium of human genes (http://bioinfo.weizmann.ac.il/genecards)... - Omics data management and annotationArye Harel
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
Methods Mol Biol 719:71-96. 2011.... - GeneAnnot: interfacing GeneCards with high-throughput gene expression compendiaVered Chalifa-Caspi
Bioinformatics Support Unit, Life Sciences Dept, Ben Gurion University of the Negev, Beer Sheva, Israel
Brief Bioinform 4:349-60. 2003....