Jaime Prilusky

Summary

Affiliation: Weizmann Institute of Science
Country: Israel

Publications

  1. doi request reprint Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules
    Jaime Prilusky
    Bioinformatics Unit, Biological Services Unit, Weizmann Institute of Science, Rehovot 76100, Israel
    J Struct Biol 175:244-52. 2011
  2. pmc Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules
    Eran Hodis
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Genome Biol 9:R121. 2008
  3. pmc A server and database for dipole moments of proteins
    Clifford E Felder
    Department of Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel
    Nucleic Acids Res 35:W512-21. 2007
  4. doi request reprint Assessment of disorder predictions in CASP8
    Orly Noivirt-Brik
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Proteins 77:210-6. 2009
  5. doi request reprint Assessment of CASP8 structure predictions for template free targets
    Moshe Ben-David
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Proteins 77:50-65. 2009
  6. pmc Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells
    Milana Frenkel-Morgenstern
    Molecular Cell Biology Department, Bioinformatics Unit, Weizmann Institute of Science, Rehovot 76100, Israel
    Nucleic Acids Res 38:D508-12. 2010
  7. ncbi request reprint Three-dimensional structure determination of proteins related to human health in their functional context at The Israel Structural Proteomics Center (ISPC). This paper was presented at ICCBM10
    Shira Albeck
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Acta Crystallogr D Biol Crystallogr 61:1364-72. 2005
  8. pmc SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
    Vladimir Sobolev
    Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
    Nucleic Acids Res 33:W39-43. 2005
  9. doi request reprint Thermo-resistant intrinsically disordered proteins are efficient 20S proteasome substrates
    Peter Tsvetkov
    Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
    Mol Biosyst 8:368-73. 2012
  10. ncbi request reprint FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded
    Jaime Prilusky
    Biological Services, Weizmann Institute of Science, Rehovot 76100, Israel
    Bioinformatics 21:3435-8. 2005

Collaborators

Detail Information

Publications12

  1. doi request reprint Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules
    Jaime Prilusky
    Bioinformatics Unit, Biological Services Unit, Weizmann Institute of Science, Rehovot 76100, Israel
    J Struct Biol 175:244-52. 2011
    ..We also describe Proteopedia's use for 3D visualization in structure-related pedagogy...
  2. pmc Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules
    Eran Hodis
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Genome Biol 9:R121. 2008
    ....
  3. pmc A server and database for dipole moments of proteins
    Clifford E Felder
    Department of Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel
    Nucleic Acids Res 35:W512-21. 2007
    ....
  4. doi request reprint Assessment of disorder predictions in CASP8
    Orly Noivirt-Brik
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Proteins 77:210-6. 2009
    ..In addition, we suggest the need of a "knowledge-independent" measure that would enable one to normalize the results of the different CASP experiments and to determine whether the disorder prediction field had improved across the years...
  5. doi request reprint Assessment of CASP8 structure predictions for template free targets
    Moshe Ben-David
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Proteins 77:50-65. 2009
    ....
  6. pmc Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells
    Milana Frenkel-Morgenstern
    Molecular Cell Biology Department, Bioinformatics Unit, Weizmann Institute of Science, Rehovot 76100, Israel
    Nucleic Acids Res 38:D508-12. 2010
    ..The raw movies may be useful as a benchmark for developing image analysis tools for individual-cell dynamic-proteomics. The database is available at http://www.dynamicproteomics.net/...
  7. ncbi request reprint Three-dimensional structure determination of proteins related to human health in their functional context at The Israel Structural Proteomics Center (ISPC). This paper was presented at ICCBM10
    Shira Albeck
    Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel
    Acta Crystallogr D Biol Crystallogr 61:1364-72. 2005
    ..This permits optimization of conditions at all stages of protein production and structure determination. A set of bioinformatics tools, which are implemented in our LIMS, is utilized to analyze each target...
  8. pmc SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment
    Vladimir Sobolev
    Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
    Nucleic Acids Res 33:W39-43. 2005
    ..The SPACE suite is accessed at http://ligin.weizmann.ac.il/space...
  9. doi request reprint Thermo-resistant intrinsically disordered proteins are efficient 20S proteasome substrates
    Peter Tsvetkov
    Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
    Mol Biosyst 8:368-73. 2012
    ..The correlation was more significant when the IUPred was used as the IDPs predicting software. We demonstrate in this work a simple experimental strategy to improve IDPs identification...
  10. ncbi request reprint FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded
    Jaime Prilusky
    Biological Services, Weizmann Institute of Science, Rehovot 76100, Israel
    Bioinformatics 21:3435-8. 2005
    ..Sliding windows permit identification of large regions within a protein that possess folding propensities different from those of the whole protein...
  11. ncbi request reprint HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories
    Jaime Prilusky
    Israel Structural Proteomics Center, Weizmann Institute of Science, Rehovot 76100, Israel
    Acta Crystallogr D Biol Crystallogr 61:671-8. 2005
    ..This should lead to much improved management and tracking of structural genomics experimental data...
  12. pmc Studying membrane proteins through the eyes of the genetic code revealed a strong uracil bias in their coding mRNAs
    Jaime Prilusky
    Bioinformatics Unit, Department of Biological Services, Weizmann Institute of Science, Rehovot 76100, Israel
    Proc Natl Acad Sci U S A 106:6662-6. 2009
    ..Taken together, the results suggest that U-richness is an evolutionarily ancient feature of mRNAs encoding integral membrane proteins, which might serve as a physiologically relevant distinctive signature to this group of mRNAs...