Grace P McCormack

Summary

Affiliation: National University of Ireland
Country: Ireland

Publications

  1. pmc Phylogenetic relationships of the marine Haplosclerida (Phylum Porifera) employing ribosomal (28S rRNA) and mitochondrial (cox1, nad1) gene sequence data
    Niamh E Redmond
    Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, United States of America
    PLoS ONE 6:e24344. 2011
  2. ncbi request reprint Emergence of a three codon deletion in gag p17 in HIV type 1 subtype C long-term survivors, and general population spread
    Grace P McCormack
    Biology Department, National University of Ireland, Maynooth, Co Kildare, Ireland
    AIDS Res Hum Retroviruses 22:195-201. 2006
  3. pmc Reverse transcriptase drug resistance mutations in HIV-1 subtype C infected patients on ART in Karonga District, Malawi
    Vijay B Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Ther 8:38. 2011
  4. pmc Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1
    Simon A A Travers
    Biology Department, National University of Ireland, Maynooth, Maynooth, Co Kildare, Ireland
    J Virol 78:10501-6. 2004
  5. pmc HIV type 1 mutational patterns in HIV type 1 subtype C-infected long-term survivors in Karonga District Malawi: further analysis and correction
    Ishla Seager
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Hum Retroviruses 28:308-13. 2012
  6. pmc Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes
    Simon A A Travers
    Biology Department, National University of Ireland, Maynooth, County Kildare, Ireland
    J Virol 79:1836-41. 2005
  7. pmc Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing
    Vijay Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
    BMC Infect Dis 13:52. 2013
  8. ncbi request reprint A study of the coevolutionary patterns operating within the env gene of the HIV-1 group M subtypes
    Simon A A Travers
    Molecular Evolution and Bioinformatics Laboratory, Department of Biology, National University of Ireland, Maynooth, Ireland
    Mol Biol Evol 24:2787-801. 2007
  9. pmc Drug resistance mutations in drug-naive HIV type 1 subtype C-infected individuals from rural Malawi
    Vijay Bansode
    Zoology Department, Martin Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Hum Retroviruses 27:439-44. 2011
  10. doi request reprint Emergence, dominance, and possible decline of CXCR4 chemokine receptor usage during the course of HIV infection
    Conor J Meehan
    Department of Zoology, Martin Ryan Institute, National University of Ireland, Galway, Ireland
    J Med Virol 82:2004-12. 2010

Collaborators

Detail Information

Publications14

  1. pmc Phylogenetic relationships of the marine Haplosclerida (Phylum Porifera) employing ribosomal (28S rRNA) and mitochondrial (cox1, nad1) gene sequence data
    Niamh E Redmond
    Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, United States of America
    PLoS ONE 6:e24344. 2011
    ..The polyphletic nature of the suborders, families and genera described in other studies is also found here...
  2. ncbi request reprint Emergence of a three codon deletion in gag p17 in HIV type 1 subtype C long-term survivors, and general population spread
    Grace P McCormack
    Biology Department, National University of Ireland, Maynooth, Co Kildare, Ireland
    AIDS Res Hum Retroviruses 22:195-201. 2006
    ..The deletion is equivalent to the loss of three amino acids in the D helix region of the gag protein, and may be associated with longer survival and onward transmission...
  3. pmc Reverse transcriptase drug resistance mutations in HIV-1 subtype C infected patients on ART in Karonga District, Malawi
    Vijay B Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Ther 8:38. 2011
    ..abstract:..
  4. pmc Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1
    Simon A A Travers
    Biology Department, National University of Ireland, Maynooth, Maynooth, Co Kildare, Ireland
    J Virol 78:10501-6. 2004
    ..Here we suggest that the most recent common ancestor of subtype C appeared in the mid- to late 1960s. Sensitivity analyses, by which possible biases due to oversampling from one district were explored, gave very similar estimates...
  5. pmc HIV type 1 mutational patterns in HIV type 1 subtype C-infected long-term survivors in Karonga District Malawi: further analysis and correction
    Ishla Seager
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Hum Retroviruses 28:308-13. 2012
    ..Although no clear association between mutations and survival could be shown, amino acid changes that are present in more than one LTS may, in the future, be shown to be important...
  6. pmc Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes
    Simon A A Travers
    Biology Department, National University of Ireland, Maynooth, County Kildare, Ireland
    J Virol 79:1836-41. 2005
    ..The presence of such sites indicates heterogeneity of selective pressures within HIV-1 group M subtype evolution that may account for the various levels of fitness of the subtypes...
  7. pmc Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing
    Vijay Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
    BMC Infect Dis 13:52. 2013
    ..The primary focus of this work was to characterize the genetic diversity and evolution of HIV drug resistant variants in an individual's provirus during antiretroviral therapy using next generation sequencing...
  8. ncbi request reprint A study of the coevolutionary patterns operating within the env gene of the HIV-1 group M subtypes
    Simon A A Travers
    Molecular Evolution and Bioinformatics Laboratory, Department of Biology, National University of Ireland, Maynooth, Ireland
    Mol Biol Evol 24:2787-801. 2007
    ....
  9. pmc Drug resistance mutations in drug-naive HIV type 1 subtype C-infected individuals from rural Malawi
    Vijay Bansode
    Zoology Department, Martin Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Hum Retroviruses 27:439-44. 2011
    ..This clearly illustrates the importance of sequencing multiple HIV-1 variants from individuals to fully assess drug resistance...
  10. doi request reprint Emergence, dominance, and possible decline of CXCR4 chemokine receptor usage during the course of HIV infection
    Conor J Meehan
    Department of Zoology, Martin Ryan Institute, National University of Ireland, Galway, Ireland
    J Med Virol 82:2004-12. 2010
    ....
  11. doi request reprint Large expansion segments in 18S rDNA support a new sponge clade (Class Demospongiae, Order Haplosclerida)
    Niamh E Redmond
    Molecular Evolution and Systematics Laboratory, MRI, Zoology Department, National University of Ireland, Galway, Ireland
    Mol Phylogenet Evol 47:1090-9. 2008
    ..These indels are very important synapomorphies, provide high support for an alternative taxonomic scheme and could help resolve the phylogeny of this order in conjunction with other phylogenetically informative characters...
  12. doi request reprint Ultrastructure of the ciliated cells of the free-swimming larva, and sessile stages, of the marine sponge Haliclona indistincta (Demospongiae: Haplosclerida)
    Kelly M Stephens
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute and School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
    J Morphol 274:1263-76. 2013
    ....
  13. ncbi request reprint The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes
    Damien M O'Halloran
    Biology Department, National University of Ireland Maynooth, Maynooth, Co Kildare, Ireland
    J Mol Evol 63:87-94. 2006
    ..This neuronal gene expansion most likely occurred in nematodes to enable them to compensate for the small number of chemosensory cells and the limited emphasis on cephalization during nematode evolution...
  14. ncbi request reprint The application of molecular phylogenetics to the analysis of viral genome diversity and evolution
    Grace P McCormack
    Biology Department, National University of Ireland, Maynooth, County Kildare, Ireland
    Rev Med Virol 12:221-38. 2002
    ..The aim of this review, therefore, is to provide researchers with an easy to understand guide to molecular phylogenetics, with special reference to viral genomes...