Rajeev K Varshney

Summary

Affiliation: International Food Policy Research Institute

Publications

  1. ncbi In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
    Rajeev K Varshney
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, D 06466 Gatersleben, Germany
    Cell Mol Biol Lett 7:537-46. 2002
  2. pmc Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties
    Nils Rostoks
    Genetics Programme and Biomathematics and Statistics Scotland, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, Scotland
    Proc Natl Acad Sci U S A 103:18656-61. 2006
  3. ncbi Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies
    R K Varshney
    Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Theor Appl Genet 114:1105-16. 2007
  4. ncbi A high density barley microsatellite consensus map with 775 SSR loci
    R K Varshney
    Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Theor Appl Genet 114:1091-103. 2007
  5. ncbi Application of genomics to molecular breeding of wheat and barley
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502 324, A P, India
    Adv Genet 58:121-55. 2007
  6. ncbi CicArMiSatDB: the chickpea microsatellite database
    Dadakhalandar Doddamani
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502324, India
    BMC Bioinformatics 15:212. 2014
  7. pmc An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.)
    Bhimana Gautami
    Center of Excellence in Genomics, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    PLoS ONE 7:e41213. 2012
  8. pmc Cytoplasmic male sterility-associated chimeric open reading frames identified by mitochondrial genome sequencing of four Cajanus genotypes
    Reetu Tuteja
    1 International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    DNA Res 20:485-95. 2013
  9. pmc A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms
    Himabindu Kudapa
    International Crops Research Institute for the Semi Arid Tropics, Patancheru 502324, India
    Mol Plant 5:1020-8. 2012
  10. pmc Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes
    Rachit K Saxena
    Center of Excellence in Genomics CEG, International Crops Research Institute for Semi Arid Tropics ICRISAT, Patancheru 502324, India
    DNA Res 19:449-61. 2012

Collaborators

Detail Information

Publications68

  1. ncbi In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
    Rajeev K Varshney
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, D 06466 Gatersleben, Germany
    Cell Mol Biol Lett 7:537-46. 2002
    ....
  2. pmc Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties
    Nils Rostoks
    Genetics Programme and Biomathematics and Statistics Scotland, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, Scotland
    Proc Natl Acad Sci U S A 103:18656-61. 2006
    ....
  3. ncbi Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies
    R K Varshney
    Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Theor Appl Genet 114:1105-16. 2007
    ..This showed a broad equivalence with respect to genetic diversity between these different data types...
  4. ncbi A high density barley microsatellite consensus map with 775 SSR loci
    R K Varshney
    Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Theor Appl Genet 114:1091-103. 2007
    ..This map also offers the possibilities of thorough alignment for the (future) physical map and implementation in haplotype diversity studies of barley...
  5. ncbi Application of genomics to molecular breeding of wheat and barley
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502 324, A P, India
    Adv Genet 58:121-55. 2007
    ..Genomics research will continue to enhance the efficiency and precision for crop improvement but will not replace conventional breeding and evaluation methods...
  6. ncbi CicArMiSatDB: the chickpea microsatellite database
    Dadakhalandar Doddamani
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502324, India
    BMC Bioinformatics 15:212. 2014
    ..Availability of genome sequence very recently opens new avenues for accelerating molecular breeding approaches for chickpea improvement...
  7. pmc An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.)
    Bhimana Gautami
    Center of Excellence in Genomics, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    PLoS ONE 7:e41213. 2012
    ....
  8. pmc Cytoplasmic male sterility-associated chimeric open reading frames identified by mitochondrial genome sequencing of four Cajanus genotypes
    Reetu Tuteja
    1 International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    DNA Res 20:485-95. 2013
    ..These ORFs display features that are known to trigger CMS in other plant species and to represent the most promising candidates for CMS-related mitochondrial rearrangements in pigeonpea. ..
  9. pmc A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms
    Himabindu Kudapa
    International Crops Research Institute for the Semi Arid Tropics, Patancheru 502324, India
    Mol Plant 5:1020-8. 2012
    ..16 polymorphism information content (PIC) value. In summary, the CcTA v2 transcript assembly and ISR markers will serve as a useful resource to accelerate genetic research and breeding applications in pigeonpea...
  10. pmc Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes
    Rachit K Saxena
    Center of Excellence in Genomics CEG, International Crops Research Institute for Semi Arid Tropics ICRISAT, Patancheru 502324, India
    DNA Res 19:449-61. 2012
    ..These PKAMs will be useful for genetics research and breeding applications in pigeonpea and for utilizing genome information from other legume species...
  11. pmc Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
    Pavana J Hiremath
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    Plant Biotechnol J 9:922-31. 2011
    ..This resource will be useful for basic and applied research for genome analysis and crop improvement in chickpea...
  12. pmc Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.)
    Anuja Dubey
    Centre of Excellence in Genomics CEG, Building 300, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502 324, Greater Hyderabad, India
    DNA Res 18:153-64. 2011
    ..Genomic resources developed in this study should be useful for basic and applied research, not only for pigeonpea improvement but also for other related, agronomically important legumes...
  13. pmc Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications
    Himabindu Kudapa
    Research Program on Grain Legumes, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Andhra Pradesh, India
    PLoS ONE 9:e86039. 2014
    ..to advance genetics research and breeding applications in chickpea and other related legumes. ..
  14. pmc Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
    Pavana J Hiremath
    International Crops Research Institute for the Semi Arid Tropics, Patancheru, India
    Plant Biotechnol J 10:716-32. 2012
    ..Development of these cost-effective CKAMs for SNP genotyping will be useful not only for genetics research and breeding applications in chickpea, but also for utilizing genome information from other sequenced or model legumes...
  15. pmc Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.)
    Mahendar Thudi
    Grain Legumes Research Program, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Hyderabad, India
    PLoS ONE 6:e27275. 2011
    ....
  16. pmc Genetic diversity and demographic history of Cajanus spp. illustrated from genome-wide SNPs
    Rachit K Saxena
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Hyderabad, Andhra Pradesh, India
    PLoS ONE 9:e88568. 2014
    ..The highest level of polymorphism in wild relatives and landraces was found in Madhya Pradesh and Andhra Pradesh provinces of India representing the centre of origin and domestication of pigeonpea respectively. ..
  17. ncbi Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.)
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    Funct Integr Genomics 14:59-73. 2014
    ..Integrated physical, genetic and genome map should provide a foundation for cloning and isolation of QTLs/genes for molecular dissection of traits as well as markers for molecular breeding for chickpea improvement...
  18. pmc Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Hyderabad, India
    Theor Appl Genet 127:445-62. 2014
    ..This genomic region contains seven SSR markers (ICCM0249, NCPGR127, TAA170, NCPGR21, TR11, GA24 and STMS11). Introgression of this region into elite cultivars is expected to enhance drought tolerance in chickpea...
  19. pmc An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations
    Abhishek Bohra
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, 502324, India
    Theor Appl Genet 125:1325-38. 2012
    ....
  20. pmc Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops
    Reyazul Rouf Mir
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Hyderabad 502 324, India
    Theor Appl Genet 125:625-45. 2012
    ....
  21. pmc Pearl millet [Pennisetum glaucum (L.) R. Br.] consensus linkage map constructed using four RIL mapping populations and newly developed EST-SSRs
    Vengaldas Rajaram
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Hyderabad, Andhra pradesh 502 324, India
    BMC Genomics 14:159. 2013
    ..It is considered an orphan crop with relatively few genomic and genetic resources. This study was undertaken to increase the EST-based microsatellite marker and genetic resources for this crop to facilitate marker-assisted breeding...
  22. doi Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics, Hyderabad, Andhra Pradesh, India
    Nat Biotechnol 31:240-6. 2013
    ..These data comprise a resource for chickpea improvement through molecular breeding and provide insights into both genome diversity and domestication...
  23. ncbi Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics, Patancheru 502 324, India
    J Biosci 37:811-20. 2012
    ..These trait-associated robust markers along with other genomic resources including genetic maps and genomic resources will certainly accelerate crop improvement programmes in the SAT legumes...
  24. pmc Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)
    Hui Wang
    Tuskegee University, Tuskegee, AL 36088, USA
    BMC Plant Biol 12:10. 2012
    ..Accordingly molecular markers have low levels of polymorphism and the number of polymorphic molecular markers available for cultivated peanut is still limiting...
  25. doi Current state-of-art of sequencing technologies for plant genomics research
    Mahendar Thudi
    Centre of Excellence in Genomics, ICRISAT, Patancheru 502 324, Greater Hyderabad, India
    Brief Funct Genomics 11:3-11. 2012
    ..This article provides an overview of different sequencing technologies with an emphasis on forthcoming TGS technologies and bioinformatics tools required for the latest evolution of DNA sequencing platforms...
  26. doi Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    Nat Biotechnol 30:83-9. 2012
    ....
  27. pmc Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)
    Neha Gujaria
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Andhra Pradesh, India
    Theor Appl Genet 122:1577-89. 2011
    ..These resources should be useful not only for genome analysis and genetics and breeding applications of chickpea, but also for comparative legume genomics...
  28. pmc Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.)
    K Ravi
    International Crops Research Institute for the Semi Arid Tropics, Patancheru, India
    Theor Appl Genet 122:1119-32. 2011
    ..This study suggests deployment of modern approaches like marker-assisted recurrent selection or genomic selection instead of marker-assisted backcrossing approach for breeding for drought tolerance in groundnut...
  29. pmc A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.)
    Y P Khedikar
    University of Agricultural Sciences UAS, Krishinagar, Dharwad, 580 005, Karnataka, India
    Theor Appl Genet 121:971-84. 2010
    ..Therefore, this marker should be useful for introgressing the major QTL for rust in desired lines/varieties of groundnut through marker-assisted backcrossing...
  30. pmc Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
    Spurthi N Nayak
    Centre of Excellence in Genomics CEG, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, 502324, Andhra Pradesh, India
    Theor Appl Genet 120:1415-41. 2010
    ..The combined set of genetic markers and their integration into an improved genetic map should facilitate chickpea genetics and breeding, as well as translational studies between chickpea and Medicago...
  31. pmc Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.)
    Rachit K Saxena
    International Crops Research Institute for the Semi Arid Tropics, Patancheru, India
    Funct Integr Genomics 11:651-7. 2011
    ....
  32. pmc Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features
    B Jayashree
    Bioinformatics Unit, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502 324, Andhra Pradesh, India
    BMC Res Notes 2:92. 2009
    ....
  33. pmc Comparative analysis of expressed sequence tags (ESTs) between drought-tolerant and -susceptible genotypes of chickpea under terminal drought stress
    Amit A Deokar
    National Research Center on Plant Biotechnology, IARI Campus, New Delhi 110012, India
    BMC Plant Biol 11:70. 2011
    ..We generated expressed sequence tags (ESTs) by suppression subtraction hybridization (SSH) to identify differentially expressed genes in drought-tolerant and -susceptible genotypes in chickpea...
  34. pmc Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)
    Abhishek Bohra
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Hyderabad, 502324, India
    BMC Plant Biol 11:56. 2011
    ....
  35. pmc Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]
    Sutapa Dutta
    National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110 012, India
    BMC Plant Biol 11:17. 2011
    ..We report a comprehensive set of validated genic simple sequence repeat (SSR) markers using deep transcriptome sequencing, and its application in genetic diversity analysis and mapping...
  36. pmc Identification of candidate genome regions controlling disease resistance in Arachis
    Soraya C M Leal-Bertioli
    Embrapa Genetic Resources and Biotechnology, C P 02372, CEP 70 770 900, Brasilia, DF, Brazil
    BMC Plant Biol 9:112. 2009
    ..However, in peanut there is an almost complete lack of knowledge of the regions of the Arachis genome that control disease resistance...
  37. pmc Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.)
    Hari D Upadhyaya
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru PO, 502324, AP, India
    BMC Plant Biol 8:106. 2008
    ..In this study, we report the genetic structure, diversity and allelic richness in a composite collection of chickpea using SSR markers, and formation of a reference set of 300 accessions...
  38. pmc Genetic relationships among seven sections of genus Arachis studied by using SSR markers
    Ravi Koppolu
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Greater Hyderabad 502 324, AP, India
    BMC Plant Biol 10:15. 2010
    ....
  39. pmc The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.)
    Nikku L Raju
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Greater Hyderabad, Andhra Pradesh, India
    BMC Plant Biol 10:45. 2010
    ..With an objective of enhancing genomic resources in pigeonpea, this study reports generation and analysis of comprehensive resource of FW- and SMD- responsive expressed sequence tags (ESTs)...
  40. pmc Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense
    Almudena Castillo
    Institute for Sustainable Agriculture IAS CSIC, Alameda del Obispo s n, 14080 Cordoba, Spain
    BMC Plant Biol 8:97. 2008
    ..chilense genome...
  41. pmc Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea)
    Luu M Cuc
    International Crop Research Institute for Semi Arid Tropics, Patancheru 502 324, Greater Hyderabad, Andhra Pradesh, India
    BMC Plant Biol 8:55. 2008
    ..The low level of polymorphism in cultivated germplasm, however, warrants a need of larger number of polymorphic microsatellite markers for cultivated groundnut...
  42. pmc Development and implementation of high-throughput SNP genotyping in barley
    Timothy J Close
    Department of Botany and Plant Sciences, University of California UCR, Riverside, CA, 92521, USA
    BMC Genomics 10:582. 2009
    ....
  43. pmc Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping
    B Jayashree
    Bioinformatics and Biometrics Unit, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502 324, Andhra Pradesh, India
    BMC Bioinformatics 7:383. 2006
    ..Such systems, while serving to manage the workflow precisely, also encourage good laboratory practice by standardizing protocols, recording and annotating data from every step of the workflow...
  44. doi Agricultural biotechnology for crop improvement in a variable climate: hope or hype?
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, India
    Trends Plant Sci 16:363-71. 2011
    ....
  45. ncbi Genomics-assisted breeding for crop improvement
    Rajeev K Varshney
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, D 06466 Gatersleben, Germany
    Trends Plant Sci 10:621-30. 2005
    ..Nevertheless, marker-assisted breeding and selection will gradually evolve into 'genomics-assisted breeding' for crop improvement...
  46. doi The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.)
    R K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Greater Hyderabad 502 324, India
    Theor Appl Genet 118:729-39. 2009
    ..Therefore, the map should be useful for the community for a variety of applications...
  47. doi Orphan legume crops enter the genomics era!
    Rajeev K Varshney
    International Crops Research Institute for Semi Arid Tropics, Patancheru 502324, A P, India
    Curr Opin Plant Biol 12:202-10. 2009
    ..The focus of these activities is the development of genome-scale data sets that can be used in high-throughput approaches to facilitate genomics-assisted breeding in these legumes...
  48. doi Next-generation sequencing technologies and their implications for crop genetics and breeding
    Rajeev K Varshney
    Centre of Excellence in Genomics CEG, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502324, A P, India
    Trends Biotechnol 27:522-30. 2009
    ....
  49. pmc A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru, Greater Hyderabad, AP, India
    BMC Genomics 10:523. 2009
    ..This study reports generation and analysis of comprehensive resource of drought- and salinity-responsive expressed sequence tags (ESTs) and gene-based markers...
  50. doi More genomic resources for less-studied crops
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics, Patancheru 502324, A P, India
    Trends Biotechnol 28:452-60. 2010
    ..These resources have the potential to accelerate gene discovery and initiate molecular breeding in these crops, thereby enhancing crop productivity to ensure food security in developing countries...
  51. ncbi Advances in cereal genomics and applications in crop breeding
    Rajeev K Varshney
    Applied Genomics Laboratory, Global Theme on Biotechnology, International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502324, A P, India
    Trends Biotechnol 24:490-9. 2006
    ..Advances made in cereal genomics research in recent years thus offer the opportunities to enhance the prediction of phenotypes from genotypes for cereal breeding...
  52. ncbi Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome
    R K Varshney
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Theor Appl Genet 113:239-50. 2006
    ..This unexpectedly high incidence of EST-SSRs physically linked at the sub-megabase level provides additional evidence of an uneven distribution of genes and the segmentation of the barley genome in gene-rich and gene-poor regions...
  53. ncbi Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    T Thiel
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, D 06466 Gatersleben, Germany
    Theor Appl Genet 106:411-22. 2003
    ....
  54. ncbi Generation and comparison of EST-derived SSRs and SNPs in barley (Hordeum vulgare L.)
    R Kota
    Institute of Plant Genetics and Crop Plant Research IPK, Correnstr 3, 06466 Gatersleben, Germany
    Hereditas 135:145-51. 2001
    ..The results show that although both marker types yielded similar groupings, a larger data set of both SSRs and SNPs is necessary to obtain stable clusters in unrelated germplasm...
  55. ncbi A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics
    Nils Stein
    Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466, Gatersleben, Germany
    Theor Appl Genet 114:823-39. 2007
    ..It provides new anchor points for detailed studies in comparative grass genomics and will support future attempts towards the integration of genetic and physical mapping information...
  56. doi Molecular plant breeding: methodology and achievements
    Rajeev K Varshney
    International Crops Research Institute for the Semi Arid Tropics ICRISAT, Patancheru 502 324, India
    Methods Mol Biol 513:283-304. 2009
    ..Some successful examples of product developments of molecular breeding have also been presented...
  57. doi Identification and characterization of toxigenic fusaria associated with sorghum grain mold complex in India
    Rajan Sharma
    International Crops Research Institute for the Semi Arid Tropics, Patancheru, Hyderabad, Andhra Pradesh 502324, India
    Mycopathologia 171:223-30. 2011
    ..Analysis of molecular variance (AMOVA) revealed 54% of the variation in the AFLP patterns of 63 isolates was due to the differences between Fusarium species, and 46% was due to differences between the strains within a species...
  58. ncbi A database of simple sequence repeats from cereal and legume expressed sequence tags mined in silico: survey and evaluation
    B Jayashree
    Bioinformatics and Biometrics Unit, International Crops Research Institute for Semi Arid Tropics, Patancheru, Andhra Pradesh, India
    In Silico Biol 6:607-20. 2006
    ..The primer pairs for non-redundant EST-SSRs have been designed and are freely available through the database (http://intranet.icrisat.org/gt1/ssr/ssrdatabase.html)...
  59. ncbi Genic microsatellite markers in plants: features and applications
    Rajeev K Varshney
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, D 06466 Gatersleben, Germany
    Trends Biotechnol 23:48-55. 2005
    ..Applications and potential uses of EST-SSRs in plant genetics and breeding are discussed...
  60. doi Comparative analysis of the grain proteome fraction in barley genotypes with contrasting salinity tolerance during germination
    Katja Witzel
    Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Plant Cell Environ 33:211-22. 2010
    ..Two of these, heat-shock protein 70 and Glc/RibDH, co-localized with the identified QTL on chromosome 5H. The putative functional role of the candidates is discussed...
  61. ncbi The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers
    Shi Ying Yang
    Diversity Arrays Technology Pty Limited, 1 Wilf Crane Crescent, Yarralumla, Canberra, ACT 2600, Australia
    J Genet 90:103-9. 2011
    ..0 cM and 451.6 cM, respectively. These are the first genetic linkage maps developed for pigeon pea, and this is the first report of genetic mapping in any grain legume using diversity arrays technology...
  62. ncbi Dissection of the barley 2L1.0 region carrying the 'Laevigatum' quantitative resistance gene to leaf rust using near-isogenic lines (NIL) and subNIL
    Thierry C Marcel
    Laboratory of Plant Breeding, Wageningen University, The Netherlands
    Mol Plant Microbe Interact 20:1604-15. 2007
    ..Possible homologs of those peroxidases and MAP3K in barley are candidates for the gene that contributes to partial resistance to P. hordei...
  63. ncbi Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species
    Ramesh K Aggarwal
    Centre for Cellular and Molecular Biology, Uppal Road, Tarnaka, Hyderabad, 500007, India
    Theor Appl Genet 114:359-72. 2007
    ....
  64. ncbi Large-scale analysis of the barley transcriptome based on expressed sequence tags
    Hangning Zhang
    Institut für Pflanzengenetik und Kulturpflanzenforschung IPK, Correnstrasse 3, D 06466 Gatersleben, Germany
    Plant J 40:276-90. 2004
    ..Moreover, because of their predominant expression in germinating seeds, TF of the AP2 and MYB type are presumably major regulators of germination...