Sudipto Saha

Summary

Affiliation: Institute of Microbial Technology
Country: India

Publications

  1. pmc Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs
    Mamoon Rashid
    Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh, India
    BMC Bioinformatics 8:337. 2007
  2. pmc Bcipep: a database of B-cell epitopes
    Sudipto Saha
    Institute of Microbial Technology Chandigarh, India
    BMC Genomics 6:79. 2005
  3. pmc AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
    Sudipto Saha
    Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh, India
    Nucleic Acids Res 34:W202-9. 2006
  4. ncbi request reprint VICMpred: an SVM-based method for the prediction of functional proteins of Gram-negative bacteria using amino acid patterns and composition
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Genomics Proteomics Bioinformatics 4:42-7. 2006
  5. ncbi request reprint BTXpred: prediction of bacterial toxins
    Sudipto Saha
    Institute of Microbial Technology Sector 39A, Chandigarh, India
    In Silico Biol 7:405-12. 2007
  6. ncbi request reprint Searching and mapping of B-cell epitopes in Bcipep database
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Methods Mol Biol 409:113-24. 2007
  7. ncbi request reprint Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Proteins 65:40-8. 2006
  8. ncbi request reprint VGIchan: prediction and classification of voltage-gated ion channels
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh 160036, India
    Genomics Proteomics Bioinformatics 4:253-8. 2006
  9. ncbi request reprint Prediction of neurotoxins based on their function and source
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    In Silico Biol 7:369-87. 2007
  10. ncbi request reprint Prediction methods for B-cell epitopes
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Methods Mol Biol 409:387-94. 2007

Detail Information

Publications11

  1. pmc Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs
    Mamoon Rashid
    Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh, India
    BMC Bioinformatics 8:337. 2007
    ..In this study, attempt has been made to develop method for predicting subcellular location of mycobacterial proteins...
  2. pmc Bcipep: a database of B-cell epitopes
    Sudipto Saha
    Institute of Microbial Technology Chandigarh, India
    BMC Genomics 6:79. 2005
    ..Bcipep is a database of experimentally determined linear B-cell epitopes of varying immunogenicity collected from literature and other publicly available databases...
  3. pmc AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
    Sudipto Saha
    Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh, India
    Nucleic Acids Res 34:W202-9. 2006
    ..A web server AlgPred has been developed for the predicting allergenic proteins and for mapping IgE epitopes on allergenic proteins (http://www.imtech.res.in/raghava/algpred/). AlgPred is available at www.imtech.res.in/raghava/algpred/...
  4. ncbi request reprint VICMpred: an SVM-based method for the prediction of functional proteins of Gram-negative bacteria using amino acid patterns and composition
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Genomics Proteomics Bioinformatics 4:42-7. 2006
    ..A five-fold cross validation was used to evaluate the performance of these methods. The web server VICMpred has been developed for predicting the function of gram-negative bacterial proteins (http://www.imtech.res.in/raghava/vicmpred/)...
  5. ncbi request reprint BTXpred: prediction of bacterial toxins
    Sudipto Saha
    Institute of Microbial Technology Sector 39A, Chandigarh, India
    In Silico Biol 7:405-12. 2007
    ..imtech.res.in/raghava/btxpred/. Supplementary information is available at http://www.imtech.res.in/raghava/btxpred/supplementary.html...
  6. ncbi request reprint Searching and mapping of B-cell epitopes in Bcipep database
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Methods Mol Biol 409:113-24. 2007
    ..The database provides a set of tools for analysis and extraction of data that includes keyword search, peptide mapping, and BLAST search. The database is available at http://www.imtech.res.in/raghava/bcipep/...
  7. ncbi request reprint Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Proteins 65:40-8. 2006
    ..The length of the peptide is also important in the prediction of B-cell epitopes from antigenic sequences. The webserver ABCpred is freely available at www.imtech.res.in/raghava/abcpred/...
  8. ncbi request reprint VGIchan: prediction and classification of voltage-gated ion channels
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh 160036, India
    Genomics Proteomics Bioinformatics 4:253-8. 2006
    ..78% by using a hybrid method that combines dipeptide-based SVM and hidden Markov model methods. A web server VGIchan has been developed for predicting and classifying voltage-gated ion channels using the above approaches...
  9. ncbi request reprint Prediction of neurotoxins based on their function and source
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    In Silico Biol 7:369-87. 2007
    ..All the modules developed in this study were evaluated using five-fold cross-validation technique. The NTXpred is available at www.imtech.res.in/raghava/ntxpred/ and mirror site at http://bioinformatics.uams.edu/mirror/ntxpred...
  10. ncbi request reprint Prediction methods for B-cell epitopes
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Methods Mol Biol 409:387-94. 2007
    ..Both of the servers assist in locating linear epitope regions in a protein...
  11. ncbi request reprint Predicting virulence factors of immunological interest
    Sudipto Saha
    Institute of Microbial Technology, Chandigarh, India
    Methods Mol Biol 409:407-15. 2007
    ..BTXpred server allows users to predict bacterial toxins, its release, and further classification of exotoxins. NTXpred server allows prediction of neurotoxins and further classifying them based on their function and source...