Federico G Hoffmann

Summary

Publications

  1. pmc Whole-genome duplication and the functional diversification of teleost fish hemoglobins
    Juan C Opazo
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    Mol Biol Evol 30:140-53. 2013
  2. pmc Evolution of the globin gene family in deuterostomes: lineage-specific patterns of diversification and attrition
    Federico G Hoffmann
    Department of Biochemistry and Molecular Biology, Mississippi State University, USA
    Mol Biol Evol 29:1735-45. 2012
  3. pmc Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes
    John A St John
    Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA
    Genome Biol 13:415. 2012
  4. pmc Conversion events in gene clusters
    Giltae Song
    Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA 16802 USA
    BMC Evol Biol 11:226. 2011
  5. pmc Comparative genomics of proteins involved in RNA nucleocytoplasmic export
    Mariana Serpeloni
    Departamento de Biologia Celular e Molecular, Universidade Federal do Parana UFPR, Curitiba, Brazil
    BMC Evol Biol 11:7. 2011
  6. doi request reprint Molecular dating of the diversification of Phyllostominae bats based on nuclear and mitochondrial DNA sequences
    Federico G Hoffmann
    Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
    Mol Phylogenet Evol 49:653-8. 2008
  7. doi request reprint INSL4 pseudogenes help define the relaxin family repertoire in the common ancestor of placental mammals
    José Ignacio Arroyo
    Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile
    J Mol Evol 75:73-8. 2012
  8. doi request reprint Gene duplication and positive selection explains unusual physiological roles of the relaxin gene in the European rabbit
    José Ignacio Arroyo
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    J Mol Evol 74:52-60. 2012
  9. doi request reprint Resolution of the laurasiatherian phylogeny: evidence from genomic data
    Mariana F Nery
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    Mol Phylogenet Evol 64:685-9. 2012
  10. doi request reprint Gene turnover and differential retention in the relaxin/insulin-like gene family in primates
    José Ignacio Arroyo
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    Mol Phylogenet Evol 63:768-76. 2012

Collaborators

  • Juan C Opazo
  • Jay F Storz
  • Mariana F Nery
  • Bettina Ebner
  • Xavier Bailly
  • Serge N Vinogradov
  • David Hoogewijs
  • Steven R Hoofer
  • José Ignacio Arroyo
  • Michael W Vandewege
  • John A St John
  • Giltae Song
  • Mariana Serpeloni
  • Jeffrey K Wickliffe
  • Carleton J Phillips
  • Sara Good
  • Miryam Venegas-Anaya
  • Brian J Raney
  • Jason T Howard
  • Sally R Isberg
  • Shane C Burgess
  • Edward L Braun
  • Louis J Guillette
  • Carl J Schmidt
  • Taisen Iguchi
  • David A Ray
  • Daniel G Peterson
  • Lee G Miles
  • Mark E Merchant
  • Llewellyn D Densmore
  • Jeremy R Sanford
  • Richard E Green
  • Fiona M McCarthy
  • Stacey L Lance
  • Matthew K Fujita
  • Eric W Triplett
  • Amanda M Cooksey
  • Jonathan M Howard
  • Tracey D Tuberville
  • Travis C Glenn
  • Jaime Gongora
  • Scott V Edwards
  • Bertrand Bed'hom
  • Kyria A Roessler
  • Amanda Y Chong
  • David D Pollock
  • Nader Pourmand
  • Matthew J Greenwold
  • Erich D Jarvis
  • Brant C Faircloth
  • Pauline Dalzell
  • Jennifer C Drew
  • ARKHAT ABZHANOV
  • Todd A Castoe
  • Ap Jason de Koning
  • DANIEL E JANES
  • Nicholas G Crawford
  • Shahid Yar Khan
  • Christopher Moran
  • John E McCormack
  • Satomi Kohno
  • Roger H Sawyer
  • Ross C Hardison
  • Newton M Vidal
  • Andréa R Ávila
  • Louxin Zhang
  • Yu Zhang
  • Chih Hao Hsu
  • Cathy Riemer
  • Hie Lim Kim
  • Samuel Goldenberg
  • Webb Miller
  • Eric D Green

Detail Information

Publications13

  1. pmc Whole-genome duplication and the functional diversification of teleost fish hemoglobins
    Juan C Opazo
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    Mol Biol Evol 30:140-53. 2013
    ..Consistent with other recent studies of globin gene family evolution in vertebrates, our results revealed evidence for repeated evolutionary transitions in the developmental regulation of Hb synthesis...
  2. pmc Evolution of the globin gene family in deuterostomes: lineage-specific patterns of diversification and attrition
    Federico G Hoffmann
    Department of Biochemistry and Molecular Biology, Mississippi State University, USA
    Mol Biol Evol 29:1735-45. 2012
    ....
  3. pmc Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes
    John A St John
    Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA
    Genome Biol 13:415. 2012
    ..The status of these projects and our planned analyses are described...
  4. pmc Conversion events in gene clusters
    Giltae Song
    Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA 16802 USA
    BMC Evol Biol 11:226. 2011
    ..In particular, conversion events can mislead inferences about the relationships among these regions, as traced by traditional methods such as construction of phylogenetic trees or multi-species alignments...
  5. pmc Comparative genomics of proteins involved in RNA nucleocytoplasmic export
    Mariana Serpeloni
    Departamento de Biologia Celular e Molecular, Universidade Federal do Parana UFPR, Curitiba, Brazil
    BMC Evol Biol 11:7. 2011
    ..However, it is not known whether RNA export in the other eukaryotic supergroups follows the same export routes as in opisthokonts...
  6. doi request reprint Molecular dating of the diversification of Phyllostominae bats based on nuclear and mitochondrial DNA sequences
    Federico G Hoffmann
    Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
    Mol Phylogenet Evol 49:653-8. 2008
    ....
  7. doi request reprint INSL4 pseudogenes help define the relaxin family repertoire in the common ancestor of placental mammals
    José Ignacio Arroyo
    Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile
    J Mol Evol 75:73-8. 2012
    ..Our results highlight the contribution of relatively old gene duplicates to the gene complement of extant species...
  8. doi request reprint Gene duplication and positive selection explains unusual physiological roles of the relaxin gene in the European rabbit
    José Ignacio Arroyo
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    J Mol Evol 74:52-60. 2012
    ....
  9. doi request reprint Resolution of the laurasiatherian phylogeny: evidence from genomic data
    Mariana F Nery
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    Mol Phylogenet Evol 64:685-9. 2012
    ..00) for all nodes within Laurasiatheria. Our study provides a further demonstration of the utility of very large and conserved genomic dataset to clarify our understanding of the evolutionary relationships among mammals...
  10. doi request reprint Gene turnover and differential retention in the relaxin/insulin-like gene family in primates
    José Ignacio Arroyo
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    Mol Phylogenet Evol 63:768-76. 2012
    ..Given the various roles of members of the RLN/INSL-like gene family in reproductive biology, it might be that changes in this gene family are associated to changes in reproductive traits...
  11. ncbi request reprint mtDNA perspective of chromosomal diversification and hybridization in Peters' tent-making bat (Uroderma bilobatum: Phyllostomidae)
    Federico G Hoffmann
    Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409 3131, USA
    Mol Ecol 12:2981-93. 2003
    ..None the less, the three chromosomal races probably represent three different biological species...
  12. pmc Evolution of the relaxin/insulin-like gene family in anthropoid primates
    José Ignacio Arroyo
    Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
    Genome Biol Evol 6:491-9. 2014
    ....
  13. doi request reprint Evolution of the ABPA subunit of androgen-binding protein expressed in the submaxillary glands in New and Old World rodent taxa
    Michael W Vandewege
    Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA
    J Mol Evol 76:324-31. 2013
    ..Thus, ABP could be involved with mate recognition and species isolation in New World as well as Old World muroids...