Joseph Heled

Summary

Publications

  1. pmc Bayesian inference of species trees from multilocus data
    Joseph Heled
    Department of Computer Science, University of Auckland, New Zealand
    Mol Biol Evol 27:570-80. 2010
  2. pmc Looking for trees in the forest: summary tree from posterior samples
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland New Zealand
    BMC Evol Biol 13:221. 2013
  3. pmc Simulating gene trees under the multispecies coalescent and time-dependent migration
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    BMC Evol Biol 13:44. 2013
  4. doi request reprint Sequence diversity under the multispecies coalescent with Yule process and constant population size
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    Theor Popul Biol 81:97-101. 2012
  5. pmc Bayesian inference of population size history from multiple loci
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    BMC Evol Biol 8:289. 2008
  6. pmc Calibrated tree priors for relaxed phylogenetics and divergence time estimation
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    Syst Biol 61:138-49. 2012
  7. pmc The perils of plenty: what are we going to do with all these genes?
    Allen Rodrigo
    Allan Wilson Centre for Molecular Evolution and Bioinformatics Institute, University of Auckland, Private Bag 92019, Auckland 1142, New Zealand
    Philos Trans R Soc Lond B Biol Sci 363:3893-902. 2008
  8. ncbi request reprint BEAST 2: a software platform for Bayesian evolutionary analysis
    Remco Bouckaert
    Computational Evolution Group, Department of Computer Science, University of Auckland, Auckland, New Zealand
    PLoS Comput Biol 10:e1003537. 2014

Detail Information

Publications8

  1. pmc Bayesian inference of species trees from multilocus data
    Joseph Heled
    Department of Computer Science, University of Auckland, New Zealand
    Mol Biol Evol 27:570-80. 2010
    ..We demonstrate that both BEST and our method have much better estimation accuracy for species tree topology than concatenation, and our method outperforms BEST in divergence time and population size estimation...
  2. pmc Looking for trees in the forest: summary tree from posterior samples
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland New Zealand
    BMC Evol Biol 13:221. 2013
    ..However, there is very little research into locating a good representative for a set of rooted time trees like the ones obtained from a BEAST analysis...
  3. pmc Simulating gene trees under the multispecies coalescent and time-dependent migration
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    BMC Evol Biol 13:44. 2013
    ..Inference of multispecies phylogenies under those conditions is difficult. Indeed even designing simulators which correctly sample gene histories under these conditions is non-trivial...
  4. doi request reprint Sequence diversity under the multispecies coalescent with Yule process and constant population size
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    Theor Popul Biol 81:97-101. 2012
    ..We also discuss the effects of relaxing some of the model assumptions...
  5. pmc Bayesian inference of population size history from multiple loci
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    BMC Evol Biol 8:289. 2008
    ..Here we present the Extended Bayesian Skyline Plot, a non-parametric Bayesian Markov chain Monte Carlo algorithm that extends a previous coalescent-based method in several ways, including the ability to analyze multiple loci...
  6. pmc Calibrated tree priors for relaxed phylogenetics and divergence time estimation
    Joseph Heled
    Department of Computer Science, University of Auckland, Auckland, New Zealand
    Syst Biol 61:138-49. 2012
    ..Our results suggest that direct estimation of the prior induced by specifying multiple calibration densities should be a prerequisite of any divergence time dating analysis...
  7. pmc The perils of plenty: what are we going to do with all these genes?
    Allen Rodrigo
    Allan Wilson Centre for Molecular Evolution and Bioinformatics Institute, University of Auckland, Private Bag 92019, Auckland 1142, New Zealand
    Philos Trans R Soc Lond B Biol Sci 363:3893-902. 2008
    ..Finally, we discuss new sequencing technologies, the types of data available and the efficacy of alignment-free methods to estimate pairwise distances for phylogenetic analyses...
  8. ncbi request reprint BEAST 2: a software platform for Bayesian evolutionary analysis
    Remco Bouckaert
    Computational Evolution Group, Department of Computer Science, University of Auckland, Auckland, New Zealand
    PLoS Comput Biol 10:e1003537. 2014
    ....