Morris Goodman

Summary

Publications

  1. pmc Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles
    Monica Uddin
    Center for Molecular Medicine and Genetics, Department of Anatomy and Cell Biology, Wayne State University School of Medicine, 540 East Canfield Avenue, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 101:2957-62. 2004
  2. ncbi request reprint Moving primate genomics beyond the chimpanzee genome
    Morris Goodman
    Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, Michigan 48201, USA
    Trends Genet 21:511-7. 2005
  3. pmc Colloquium paper: phylogenomic evidence of adaptive evolution in the ancestry of humans
    Morris Goodman
    Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 107:8918-23. 2010
  4. pmc Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries
    Morris Goodman
    Center for Molecular Medicine and Genetics, Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 106:20824-9. 2009
  5. ncbi request reprint Coadaptive evolution in cytochrome c oxidase: 9 of 13 subunits show accelerated rates of nonsynonymous substitution in anthropoid primates
    Jeffrey W Doan
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Mol Phylogenet Evol 33:944-50. 2004
  6. pmc Elephant transcriptome provides insights into the evolution of eutherian placentation
    Zhuo Cheng Hou
    Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development NIH DHHS, Detroit, Michigan, USA
    Genome Biol Evol 4:713-25. 2012
  7. pmc Molecular evolution of the cytochrome c oxidase subunit 5A gene in primates
    Monica Uddin
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit MI 48201, USA
    BMC Evol Biol 8:8. 2008
  8. pmc The human progesterone receptor shows evidence of adaptive evolution associated with its ability to act as a transcription factor
    Caoyi Chen
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Mol Phylogenet Evol 47:637-49. 2008
  9. pmc Silencing, positive selection and parallel evolution: busy history of primate cytochromes C
    Denis Pierron
    Center for Molecular Medicine and Genetics, Wayne State University, School of Medicine, Detroit, Michigan, United States of America
    PLoS ONE 6:e26269. 2011
  10. pmc Ancient origin of placental expression in the growth hormone genes of anthropoid primates
    Zack Papper
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 106:17083-8. 2009

Collaborators

Detail Information

Publications34

  1. pmc Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles
    Monica Uddin
    Center for Molecular Medicine and Genetics, Department of Anatomy and Cell Biology, Wayne State University School of Medicine, 540 East Canfield Avenue, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 101:2957-62. 2004
    ....
  2. ncbi request reprint Moving primate genomics beyond the chimpanzee genome
    Morris Goodman
    Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, Michigan 48201, USA
    Trends Genet 21:511-7. 2005
    ..Some of these traits have been discovered recently, particularly in genes encoding proteins that are important for brain function...
  3. pmc Colloquium paper: phylogenomic evidence of adaptive evolution in the ancestry of humans
    Morris Goodman
    Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 107:8918-23. 2010
    ....
  4. pmc Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries
    Morris Goodman
    Center for Molecular Medicine and Genetics, Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 106:20824-9. 2009
    ....
  5. ncbi request reprint Coadaptive evolution in cytochrome c oxidase: 9 of 13 subunits show accelerated rates of nonsynonymous substitution in anthropoid primates
    Jeffrey W Doan
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Mol Phylogenet Evol 33:944-50. 2004
  6. pmc Elephant transcriptome provides insights into the evolution of eutherian placentation
    Zhuo Cheng Hou
    Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development NIH DHHS, Detroit, Michigan, USA
    Genome Biol Evol 4:713-25. 2012
    ....
  7. pmc Molecular evolution of the cytochrome c oxidase subunit 5A gene in primates
    Monica Uddin
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit MI 48201, USA
    BMC Evol Biol 8:8. 2008
    ..Here, we test the hypothesis that COX5A, the ETC gene that encodes cytochrome c oxidase subunit 5A, shows a pattern of anthropoid-specific adaptive evolution, and investigate the distribution of this protein in catarrhine brains...
  8. pmc The human progesterone receptor shows evidence of adaptive evolution associated with its ability to act as a transcription factor
    Caoyi Chen
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Mol Phylogenet Evol 47:637-49. 2008
    ..Positive selection provides the basis for the hypothesis that changes in structure and function of the progesterone receptor during evolution contribute to the diversity of primate reproductive biology, especially in parturition...
  9. pmc Silencing, positive selection and parallel evolution: busy history of primate cytochromes C
    Denis Pierron
    Center for Molecular Medicine and Genetics, Wayne State University, School of Medicine, Detroit, Michigan, United States of America
    PLoS ONE 6:e26269. 2011
    ....
  10. pmc Ancient origin of placental expression in the growth hormone genes of anthropoid primates
    Zack Papper
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 106:17083-8. 2009
    ..e., the roles played by placenta-expressed GHs in human pregnancy may have a longer evolutionary history than previously appreciated)...
  11. pmc Distinct genomic signatures of adaptation in pre- and postnatal environments during human evolution
    Monica Uddin
    Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 105:3215-20. 2008
    ..Comparing adaptively evolving genes from pre- and postnatal-stage tissues suggests that different selective pressures act on the development vs. the maintenance of the human phenotype...
  12. ncbi request reprint Genomic data reject the hypothesis of a prosimian primate clade
    Natalie M Jameson
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    J Hum Evol 61:295-305. 2011
    ..Our results provide the framework on which primate morphological, reproductive, and genomic features can be reconstructed in the broader context of mammalian phylogeny...
  13. pmc Rapid electrostatic evolution at the binding site for cytochrome c on cytochrome c oxidase in anthropoid primates
    Timothy R Schmidt
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 102:6379-84. 2005
    ..We suggest that reducing the electrostatic interaction between COX and CYC was part of the adaptive evolution underlying the emergence of anthropoid primates...
  14. ncbi request reprint Rapid nonsynonymous evolution of the iron-sulfur protein in anthropoid primates
    Jeffrey W Doan
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, 540 E Canfield Avenue, Detroit, MI 48201, USA
    J Bioenerg Biomembr 37:35-41. 2005
    ..Nevertheless, we find that the catalytically active ISP has an accelerated rate of amino acid replacement in anthropoid primates whereas the catalytically inactive subunit 9 does not...
  15. doi request reprint Characterization of human cortical gene expression in relation to glucose utilization
    Kirstin N Sterner
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Am J Hum Biol 25:418-30. 2013
    ..The objectives of this study were to determine developmental trajectories of gene expression and to examine the evolutionary history of genes differentially expressed as a function of age...
  16. pmc Emergence of hormonal and redox regulation of galectin-1 in placental mammals: implication in maternal-fetal immune tolerance
    Nandor Gabor Than
    Perinatology Research Branch, National Institute of Child Health and Human Development, National Institutes of Health, and Department of Health and Human Services, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 105:15819-24. 2008
    ....
  17. pmc Adaptive evolution of cytochrome c oxidase subunit VIII in anthropoid primates
    Allon Goldberg
    Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 100:5873-8. 2003
    ..We argue that these changes were linked to the evolution of an expanded neocortex in anthropoid primates...
  18. pmc Phylogenetic comparisons suggest that distance from the locus control region guides developmental expression of primate beta-type globin genes
    Robert M Johnson
    Department of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 103:3186-91. 2006
    ....
  19. pmc Dynamic gene expression in the human cerebral cortex distinguishes children from adults
    Kirstin N Sterner
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, Michigan, United States of America
    PLoS ONE 7:e37714. 2012
    ....
  20. ncbi request reprint The phylogenetic history of New World monkey beta globin reveals a platyrrhine beta to delta gene conversion in the atelid ancestry
    Tom Prychitko
    Department of Anatomy and Cell Biology, Wayne State University, Detroit, MI, USA
    Mol Phylogenet Evol 35:225-34. 2005
    ..This phylogeny generally agreed with results from other nuclear genes. The one exception was that the beta sequences did not place the callitrichine clade within the Cebidae but weakly joined the callitrichine and atelid clades...
  21. pmc Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: enlarging genus Homo
    Derek E Wildman
    Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, 540 East Canfield Avenue, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 100:7181-8. 2003
    ....
  22. pmc OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences
    Guozhen Liu
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine Detroit, MI 48201, USA
    Source Code Biol Med 2:5. 2007
    ..Since this feature is not available in most alignment tools, codon reading frames often must be checked manually before evolutionary analyses can commence...
  23. ncbi request reprint Accelerated evolution of the electron transport chain in anthropoid primates
    Lawrence I Grossman
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, 540 East Canfield Avenue, Detroit, MI 48201, USA
    Trends Genet 20:578-85. 2004
    ..Two important questions are: (i) how has evolution altered ETC function? and; (ii) how might functional changes in the ETC be linked to evolution of an expanded neocortical brain?..
  24. ncbi request reprint Retention of a duplicate gene through changes in subcellular targeting: an electron transport protein homologue localizes to the golgi
    Timothy R Schmidt
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    J Mol Evol 57:222-8. 2003
    ..Noncomplementary null mutations could also uncover an alternate localization, which is the more likely case for pCOX7AR...
  25. ncbi request reprint Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates)
    Juan C Opazo
    Center for Molecular Medicine and Genetics, School of Medicine, Wayne State University, Detroit, MI 48201, USA
    Mol Phylogenet Evol 40:274-80. 2006
    ..Divergence time estimations using both local molecular clock and Bayesian approaches suggest the families diverged from one another over a short period of geological time in the late Oligocene-early Miocene...
  26. pmc A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death
    Nandor Gabor Than
    Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Department of Health and Human Services, Detroit, MI 48201, USA
    Proc Natl Acad Sci U S A 106:9731-6. 2009
    ....
  27. ncbi request reprint Amino acid replacement is rapid in primates for the mature polypeptides of COX subunits, but not for their targeting presequences
    Timothy R Schmidt
    Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
    Gene 286:13-9. 2002
    ..Since the functions of the targeting and mature proteins of these polypeptides are different, the mature portions of these genes are likely to have undergone a functionally significant change that is adaptive in nature...
  28. ncbi request reprint Globin gene switching in primates
    Robert M Johnson
    Department of Biochemistry and Molecular Biology, Wayne State University, Detroit, MI 48201, USA
    Comp Biochem Physiol A Mol Integr Physiol 133:877-83. 2002
    ....
  29. ncbi request reprint Dynamic retrotransposition of ERV-9 LTR and L1 in the beta-globin gene locus during primate evolution
    Jianhua Ling
    Department of Biochemistry and Molecular Biology, School of Medicine, Medical College of Georgia, Augusta, GA 30912, USA
    Mol Phylogenet Evol 30:867-71. 2004
  30. pmc Genomics, biogeography, and the diversification of placental mammals
    Derek E Wildman
    Perinatology Research Branch, National Institute of Child Health and Human Development National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20892, USA
    Proc Natl Acad Sci U S A 104:14395-400. 2007
    ..Crown placental mammalian diversification appears to be largely the result of ancient plate tectonic events that allowed time for convergent phenotypes to evolve in the descendant clades...
  31. pmc Functionally important glycosyltransferase gain and loss during catarrhine primate emergence
    Chihiro Koike
    Department of Surgery and Thomas E Starzl Transplantation Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA
    Proc Natl Acad Sci U S A 104:559-64. 2007
    ..However, we emphasize that positively selected regulatory changes in sugar chain metabolism might well have contributed in a major way to catarrhine origins...
  32. pmc Evolution of the mammalian placenta revealed by phylogenetic analysis
    Derek E Wildman
    Perinatology Research Branch, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA
    Proc Natl Acad Sci U S A 103:3203-8. 2006
    ..The influence of these factors on placental development needs further investigation...
  33. ncbi request reprint Episodic positive selection in ape cytochrome c oxidase subunit IV
    Derek E Wildman
    Mol Biol Evol 19:1812-5. 2002
  34. pmc Evolution of increased glia-neuron ratios in the human frontal cortex
    Chet C Sherwood
    Department of Anthropology, The George Washington University, Washington, DC 20052, USA
    Proc Natl Acad Sci U S A 103:13606-11. 2006
    ....