Georgia Giannoukos

Summary

Publications

  1. pmc Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
    Georgia Giannoukos
    Genome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA
    Genome Biol 13:R23. 2012
  2. pmc A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454
    Niall J Lennon
    Genome Sequencing Platform, Broad Institute of MIT and Harvard, 320 Charles St, Cambridge, MA 02141, USA
    Genome Biol 11:R15. 2010
  3. pmc Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    Brian J Haas
    Genome Sequencing and Analysis Program, The Broad Institute, Cambridge, Massachusetts 02142, USA
    Genome Res 21:494-504. 2011

Collaborators

  • Dirk Gevers
  • Jonathan Livny
  • Andreas Gnirke
  • Rob Knight
  • Brian J Haas
  • Niall J Lennon
  • Ashlee M Earl
  • Bruce W Birren
  • Mike Feldgarden
  • Dawn Ciulla
  • Diana Tabbaa
  • Todd Z DeSantis
  • Joseph F Petrosino
  • Erica Sodergren
  • Sarah K Highlander
  • Doyle V Ward
  • Barbara Methe
  • Cindi A Hoover
  • Matthew R Henn
  • Lisa Green
  • John Stalker
  • Kamran Rizzolo
  • Michael Weiand
  • Scott Steelman
  • Robert Nicol
  • Andrew Zimmer
  • Frank Juhn
  • Robert E Lintner
  • Karen Ponchner
  • Danielle McCarthy
  • William Brockman
  • Scott Anderson
  • Riza Daza
  • Andrew Barry
  • David B Jaffe
  • Andrew Hollinger
  • Pablo Alvarez
  • Elizabeth Ryan
  • Danielle Perrin
  • Taryn L Powers
  • Carsten Russ
  • Chad Nusbaum
  • Rachel L Erlich
  • Todd Sparrow
  • Dana Robbins

Detail Information

Publications3

  1. pmc Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
    Georgia Giannoukos
    Genome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA
    Genome Biol 13:R23. 2012
    ..The resulting expression profiles were highly reproducible, enriched up to 40-fold for non-rRNA transcripts, and correlated well with profiles representing undepleted total RNA...
  2. pmc A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454
    Niall J Lennon
    Genome Sequencing Platform, Broad Institute of MIT and Harvard, 320 Charles St, Cambridge, MA 02141, USA
    Genome Biol 11:R15. 2010
    ..Using this methodology, one technician can create 96 sequence-ready 454 libraries in 2 days, a dramatic improvement over the standard method...
  3. pmc Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    Brian J Haas
    Genome Sequencing and Analysis Program, The Broad Institute, Cambridge, Massachusetts 02142, USA
    Genome Res 21:494-504. 2011
    ..Shotgun metagenomic sequences of our mock community appear to be devoid of 16S chimeras, supporting a role for shotgun metagenomics in validating novel organisms discovered in targeted sequence surveys...