Affiliation: TU Munich
- RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic treesA Stamatakis
Department of Computer Science, Technical University of Munich Boltzmannstrasse 3, D 85748 München, Germany
Bioinformatics 21:456-63. 2005..Due to the combinatorial and computational complexity the size of trees which can be computed on a Biologist's PC workstation within reasonable time is limited to trees containing approximately 100 taxa...
- Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing dataAlexandros Stamatakis
The Exelixis Lab I12, Department of Computer Science, Technische Universitat Munchen, Boltzmannstr 3, D 85748, Garching b München, Germany
Bioinformatics 26:i132-9. 2010..We also introduce a set of algorithmic rules to efficiently conduct tree searches via subtree pruning and re-grafting moves using this mechanism...
- A rapid bootstrap algorithm for the RAxML Web serversAlexandros Stamatakis
Exelixis Lab, Teaching and Research Unit Bioinformatics, Department of Computer Science, Ludwig Maximilians University Munich, Munich, Germany
Syst Biol 57:758-71. 2008..These Web servers offer the possibility to conduct large-scale phylogenetic inferences to a large part of the community that does not have access to, or the expertise to use, high-performance computing resources...
- ARB: a software environment for sequence dataWolfgang Ludwig
Lehrstuhl fur Mikrobiologie, Technische Universitat Munchen, D 853530 Freising, Germany
Nucleic Acids Res 32:1363-71. 2004..Currently, the package is used by numerous working groups worldwide...