Michael Seifert

Summary

Country: Germany

Publications

  1. ncbi Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana
    Michael Seifert
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Gatersleben, Germany
    PLoS Comput Biol 8:e1002286. 2012
  2. ncbi Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data
    Michael Seifert
    Leibniz Institute of Plant Genetics and Crop Plant Research, Data Inspection Group, Corrensstrasse 3, 06466 Gatersleben, Germany
    Bioinformatics 25:2118-25. 2009
  3. ncbi Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models
    Michael Seifert
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Gatersleben, Germany
    Bioinformatics 27:1645-52. 2011
  4. ncbi Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
    Gudrun Mönke
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK Corrensstr 3, D 06466 Gatersleben, Germany
    Nucleic Acids Res 40:8240-54. 2012
  5. ncbi Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana
    Astrid Junker
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, D 06466 Gatersleben, Germany
    Plant J 71:427-42. 2012
  6. ncbi MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays
    Michael Seifert
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Gatersleben, Germany, Institut de Biologie de l Ecole Normale Supérieure, Centre National de la Recherche Scientifique CNRS, UMR8197, Paris, France, Cellular Networks and Systems Biology, Biotechnology Center of the Technical University Dresden, Dresden, Germany and Groningen Bioinformatics Centre, University of Groningen, Groningen, The Netherlands
    Bioinformatics 28:2930-9. 2012
  7. ncbi Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids
    Ali M Banaei Moghaddam
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466 Gatersleben, Germany
    Plant J 67:691-700. 2011

Collaborators

Detail Information

Publications7

  1. ncbi Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana
    Michael Seifert
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Gatersleben, Germany
    PLoS Comput Biol 8:e1002286. 2012
    ..An implementation of parsimonious higher-order HMMs is available as part of the open source Java library Jstacs (www.jstacs.de/index.php/PHHMM)...
  2. ncbi Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data
    Michael Seifert
    Leibniz Institute of Plant Genetics and Crop Plant Research, Data Inspection Group, Corrensstrasse 3, 06466 Gatersleben, Germany
    Bioinformatics 25:2118-25. 2009
    ....
  3. ncbi Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models
    Michael Seifert
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Gatersleben, Germany
    Bioinformatics 27:1645-52. 2011
    ..Additional information about the distribution of gene expression levels and distances between adjacent genes on chromosomes should be integrated into the analysis of tumor expression profiles...
  4. ncbi Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
    Gudrun Mönke
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK Corrensstr 3, D 06466 Gatersleben, Germany
    Nucleic Acids Res 40:8240-54. 2012
    ..The data strengthen and extend the notion that ABI3 is essential for the protection of embryonic structures from desiccation and raise pertinent questions regarding the specificity of promoter recognition...
  5. ncbi Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana
    Astrid Junker
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, D 06466 Gatersleben, Germany
    Plant J 71:427-42. 2012
    ..Furthermore, the data suggest non-embryonic functions for LEC1 during post-germinative etiolation...
  6. ncbi MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays
    Michael Seifert
    Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Gatersleben, Germany, Institut de Biologie de l Ecole Normale Supérieure, Centre National de la Recherche Scientifique CNRS, UMR8197, Paris, France, Cellular Networks and Systems Biology, Biotechnology Center of the Technical University Dresden, Dresden, Germany and Groningen Bioinformatics Centre, University of Groningen, Groningen, The Netherlands
    Bioinformatics 28:2930-9. 2012
    ..Therefore, a method for the identification of more than two methylation states is highly desirable...
  7. ncbi Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids
    Ali M Banaei Moghaddam
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466 Gatersleben, Germany
    Plant J 67:691-700. 2011
    ..In conclusion, intra-species hybridization does not result in gross changes to chromatin modifications...