Affiliation: Max Planck Institute for Molecular Genetics
- Similarities of ordered gene listsXinan Yang
Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestr 73, 14195 Berlin, Germany
J Bioinform Comput Biol 4:693-708. 2006..We present a novel algorithm to uncover that two lists of differentially expressed genes are similar, even if these similarities are not apparent to the eye. The method is based on the ordering in the lists...
- OrderedList--a bioconductor package for detecting similarity in ordered gene listsClaudio Lottaz
Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics Ihnestrasse 63 73, D 14195 Berlin, Germany
Bioinformatics 22:2315-6. 2006..AVAILABILITY: http://www.bioconductor.org CONTACT: firstname.lastname@example.org SUPPLEMENTARY INFORMATION: Please visit our webpage on http://compdiag.molgen.mpg.de/software...
- Detecting common gene expression patterns in multiple cancer outcome entitiesXinan Yang
Computational Diagnostics Group, Department of Computational Molecular Biology, MPI for Molecular Genetics, Ihnestr 73, 14195 Berlin, Germany
Biomed Microdevices 7:247-51. 2005..These genes complement the set of previously published candidates for universal prognostic markers in cancer...
- Meta-analysis of several gene lists for distinct types of cancer: a simple way to reveal common prognostic markersXinan Yang
State Key Laboratory of Bioelectronics, Southeast University, Nanjing, PR China
BMC Bioinformatics 8:118. 2007..Three data sets for leukemia and the other six for different solid tumors are used to demonstrate our method, using established statistical techniques...