Morgane Thomas-Chollier

Summary

Affiliation: Max Planck Institute for Molecular Genetics
Country: Germany

Publications

  1. doi request reprint Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany
    Nat Protoc 6:1860-9. 2011
  2. doi request reprint A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany
    Nat Protoc 7:1551-68. 2012
  3. pmc RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, Berlin 14195, Germany
    Nucleic Acids Res 40:e31. 2012
  4. pmc RSAT 2011: regulatory sequence analysis tools
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany
    Nucleic Acids Res 39:W86-91. 2011
  5. pmc A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany
    Proc Natl Acad Sci U S A 110:17826-31. 2013

Detail Information

Publications5

  1. doi request reprint Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany
    Nat Protoc 6:1860-9. 2011
    ..All of the tools are fully available online and do not need any additional installation. The complete protocol takes about 45 min, but each individual tool runs in a few minutes...
  2. doi request reprint A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany
    Nat Protoc 7:1551-68. 2012
    ..The complete workflow is achieved in about 25 min of computational time on the Regulatory Sequence Analysis Tools (RSAT) Web server. This protocol can be followed in about 1 h...
  3. pmc RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, Berlin 14195, Germany
    Nucleic Acids Res 40:e31. 2012
    ..To our knowledge, peak-motifs is the only tool that performs a complete motif analysis and offers a user-friendly web interface without any restriction on sequence size or number of peaks...
  4. pmc RSAT 2011: regulatory sequence analysis tools
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany
    Nucleic Acids Res 39:W86-91. 2011
    ..Availability (web site, stand-alone programs and SOAP/WSDL (Simple Object Access Protocol/Web Services Description Language) web services): http://rsat.ulb.ac.be/rsat/...
  5. pmc A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms
    Morgane Thomas-Chollier
    Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany
    Proc Natl Acad Sci U S A 110:17826-31. 2013
    ....