Korbinian Schneeberger

Summary

Affiliation: Max Planck Institute for Biological Cybernetics
Country: Germany

Publications

  1. pmc Simultaneous alignment of short reads against multiple genomes
    Korbinian Schneeberger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstrasse 37 39, D 72076 Tubingen, Germany
    Genome Biol 10:R98. 2009
  2. doi request reprint Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs
    Marco Todesco
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Curr Biol 22:166-70. 2012
  3. pmc The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
    Stephan Ossowski
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Science 327:92-4. 2010
  4. doi request reprint Whole-genome sequencing of multiple Arabidopsis thaliana populations
    Jun Cao
    Max Planck Institute for Developmental Biology, Tubingen, Germany
    Nat Genet 43:956-63. 2011
  5. pmc Sequencing of natural strains of Arabidopsis thaliana with short reads
    Stephan Ossowski
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tubingen, Germany
    Genome Res 18:2024-33. 2008
  6. pmc Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis
    Ya Long Guo
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany
    Plant Physiol 157:757-69. 2011
  7. pmc Reference-guided assembly of four diverse Arabidopsis thaliana genomes
    Korbinian Schneeberger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, D 72076 Tubingen, Germany
    Proc Natl Acad Sci U S A 108:10249-54. 2011
  8. doi request reprint Synteny-based mapping-by-sequencing enabled by targeted enrichment
    Vinicius C Galvão
    Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Plant J 71:517-26. 2012
  9. doi request reprint Structure determinants for accurate processing of miR172a in Arabidopsis thaliana
    Schallum Werner
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Curr Biol 20:42-8. 2010
  10. doi request reprint Fast-forward genetics enabled by new sequencing technologies
    Korbinian Schneeberger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Trends Plant Sci 16:282-8. 2011

Collaborators

Detail Information

Publications12

  1. pmc Simultaneous alignment of short reads against multiple genomes
    Korbinian Schneeberger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstrasse 37 39, D 72076 Tubingen, Germany
    Genome Biol 10:R98. 2009
    ..Demonstrated benefits include access to polymorphisms that cannot be identified by alignments against the reference alone. Download GenomeMapper at http://1001genomes.org...
  2. doi request reprint Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs
    Marco Todesco
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Curr Biol 22:166-70. 2012
    ..Our results suggest that natural variation in miRNA biogenesis resulting from cis mutations is a common contributor to phenotypic variation in plants...
  3. pmc The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
    Stephan Ossowski
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Science 327:92-4. 2010
    ..We explain this very biased spectrum of base substitution mutations as a result of two main processes: deamination of methylated cytosines and ultraviolet light-induced mutagenesis...
  4. doi request reprint Whole-genome sequencing of multiple Arabidopsis thaliana populations
    Jun Cao
    Max Planck Institute for Developmental Biology, Tubingen, Germany
    Nat Genet 43:956-63. 2011
    ..thaliana diverged from its closest relative 10 million years ago with the spectrum observed in the laboratory. Recent species-wide selective sweeps are rare, and potentially deleterious mutations are more common in marginal populations...
  5. pmc Sequencing of natural strains of Arabidopsis thaliana with short reads
    Stephan Ossowski
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tubingen, Germany
    Genome Res 18:2024-33. 2008
    ..Our pipeline for aligning reads and predicting SNPs and indels, SHORE, is available for download at http://1001genomes.org...
  6. pmc Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis
    Ya Long Guo
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany
    Plant Physiol 157:757-69. 2011
    ..Finally, in contrast to Drosophila, there is a clearly positive relationship between interspecific divergence and intraspecific polymorphisms...
  7. pmc Reference-guided assembly of four diverse Arabidopsis thaliana genomes
    Korbinian Schneeberger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, D 72076 Tubingen, Germany
    Proc Natl Acad Sci U S A 108:10249-54. 2011
    ..Genome assemblies, raw reads, and further information are accessible through http://1001genomes.org/projects/assemblies.html...
  8. doi request reprint Synteny-based mapping-by-sequencing enabled by targeted enrichment
    Vinicius C Galvão
    Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Plant J 71:517-26. 2012
    ....
  9. doi request reprint Structure determinants for accurate processing of miR172a in Arabidopsis thaliana
    Schallum Werner
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Curr Biol 20:42-8. 2010
    ..Our ability to engineer de novo a functional minimal miRNA precursor highlights that we have discovered several elements both necessary and sufficient for accurate miRNA processing...
  10. doi request reprint Fast-forward genetics enabled by new sequencing technologies
    Korbinian Schneeberger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Trends Plant Sci 16:282-8. 2011
    ..Deployment of such genes to improve crops or engineer microbes that produce valuable compounds heralds a potential paradigm shift for plant biology...
  11. doi request reprint A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana
    Sridevi Sureshkumar
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, D 72076 Tubingen, Germany
    Science 323:1060-3. 2009
    ..The Bur-0 IIL1 defect thus presents a genetically tractable model for triplet repeat expansions and their variability in natural populations...
  12. pmc Evolution of Arabidopsis thaliana microRNAs from random sequences
    Felipe Fenselau de Felippes
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    RNA 14:2455-9. 2008
    ..Subsequent stabilization through coevolution with initially fortuitous targets may lead to fixation of a small subset of these proto-miRNA genes...