A Ramette

Summary

Affiliation: Max Planck Institute for Marine Microbiology
Country: Germany

Publications

  1. pmc Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets
    Angélique Gobet
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Bremen, Germany
    Nucleic Acids Res 38:e155. 2010
  2. pmc Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems
    Lucie Zinger
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Bremen, Germany
    PLoS ONE 6:e24570. 2011
  3. pmc The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments
    Christina Bienhold
    HGF MPG Group for Deep Sea Ecology and Technology, Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany
    ISME J 6:724-32. 2012
  4. pmc Spatial scales of bacterial diversity in cold-water coral reef ecosystems
    Sandra Schöttner
    HGF MPG Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, Bremen, Germany
    PLoS ONE 7:e32093. 2012
  5. pmc Effects of eutrophication, seasonality and macrofouling on the diversity of bacterial biofilms in equatorial coral reefs
    Yvonne Sawall
    Leibniz Center for Tropical Marine Ecology, Bremen, Germany
    PLoS ONE 7:e39951. 2012
  6. pmc Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges
    Sandra Schöttner
    HGF MPG Group for Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, Bremen, Germany
    PLoS ONE 8:e55505. 2013
  7. pmc Diversity and dynamics of rare and of resident bacterial populations in coastal sands
    Angélique Gobet
    HGF MPG Group for Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, Bremen, Germany
    ISME J 6:542-53. 2012
  8. pmc Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes
    Ivaylo Kostadinov
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Microb Inform Exp 1:9. 2011
  9. doi request reprint Impact of space, time and complex environments on microbial communities
    A Ramette
    Max Planck Institute for Marine Microbiology, Bremen, Germany
    Clin Microbiol Infect 15:60-2. 2009
  10. pmc Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities
    Alban Ramette
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Appl Environ Microbiol 75:2495-505. 2009

Collaborators

Detail Information

Publications26

  1. pmc Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets
    Angélique Gobet
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Bremen, Germany
    Nucleic Acids Res 38:e155. 2010
    ..Future applications can be foreseen for data sets from different types of habitats, e.g. other marine environments, soil and human microbiota...
  2. pmc Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems
    Lucie Zinger
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Bremen, Germany
    PLoS ONE 6:e24570. 2011
    ..Marine microbial communities have been essential contributors to global biomass, nutrient cycling, and biodiversity since the early history of Earth, but so far their community distribution patterns remain unknown in most marine ecosystems...
  3. pmc The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments
    Christina Bienhold
    HGF MPG Group for Deep Sea Ecology and Technology, Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany
    ISME J 6:724-32. 2012
    ....
  4. pmc Spatial scales of bacterial diversity in cold-water coral reef ecosystems
    Sandra Schöttner
    HGF MPG Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, Bremen, Germany
    PLoS ONE 7:e32093. 2012
    ..Deciphering principle patterns of bacterial community variation over multiple spatial scales may however prove critical for a better understanding of factors contributing to cold-water coral reef stability and functioning...
  5. pmc Effects of eutrophication, seasonality and macrofouling on the diversity of bacterial biofilms in equatorial coral reefs
    Yvonne Sawall
    Leibniz Center for Tropical Marine Ecology, Bremen, Germany
    PLoS ONE 7:e39951. 2012
    ..Path analysis revealed a complex interplay of various environmental and biological factors explaining the spatial and temporal variations in bacterial biofilm communities under natural conditions...
  6. pmc Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges
    Sandra Schöttner
    HGF MPG Group for Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, Bremen, Germany
    PLoS ONE 8:e55505. 2013
    ....
  7. pmc Diversity and dynamics of rare and of resident bacterial populations in coastal sands
    Angélique Gobet
    HGF MPG Group for Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, Bremen, Germany
    ISME J 6:542-53. 2012
    ....
  8. pmc Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes
    Ivaylo Kostadinov
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Microb Inform Exp 1:9. 2011
    ..abstract:..
  9. doi request reprint Impact of space, time and complex environments on microbial communities
    A Ramette
    Max Planck Institute for Marine Microbiology, Bremen, Germany
    Clin Microbiol Infect 15:60-2. 2009
    ..Here, we briefly review the likely causes that may explain this remarkable scientific revolution and present a synthesized view about how to describe microbial communities in their complex environmental context...
  10. pmc Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities
    Alban Ramette
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Appl Environ Microbiol 75:2495-505. 2009
    ..The new strategy represents a major advance for the detailed quantitative description of specific OTUs within complex communities. Further ecological applications of the new strategy are also proposed...
  11. pmc Multivariate analyses in microbial ecology
    Alban Ramette
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Bremen, Germany
    FEMS Microbiol Ecol 62:142-60. 2007
    ..Because such tools aim at reducing data set complexity, at identifying major patterns and putative causal factors, they will certainly find many applications in microbial ecology...
  12. pmc Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem
    Alban Ramette
    Center for Microbial Ecology, Michigan State University, 540 Plant and Soil Sciences Building, East Lansing, MI 48824 1325, USA
    Proc Natl Acad Sci U S A 104:2761-6. 2007
    ....
  13. ncbi request reprint Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution
    Alban Ramette
    Center for Microbial Ecology, Michigan State University, 540 Plant and Soil Sciences Building, East Lansing, MI 48824 1325, USA
    Microb Ecol 53:197-207. 2007
    ..Furthermore, several conceptual and methodological pitfalls that could hamper future developments of the field are identified, and future approaches and new lines of investigation are suggested...
  14. ncbi request reprint Novel observations of Thiobacterium, a sulfur-storing Gammaproteobacterium producing gelatinous mats
    Stefanie Grünke
    HGF MPG Joint Research Group for Deep Sea Ecology and Technology, Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany
    ISME J 4:1031-43. 2010
    ..Further phylogenetic characterization of the mats led to the discovery of an unexpected microbial diversity associated with Thiobacterium...
  15. pmc Species abundance and diversity of Burkholderia cepacia complex in the environment
    Alban Ramette
    Center for Microbial Ecology, 540 Plant and Soil Sciences Building, Michigan State University, East Lansing, MI 48824 1325, USA
    Appl Environ Microbiol 71:1193-201. 2005
    ..cepacia complex species and closely related strains of the same species may coexist at high population levels but also species composition and abundance may dramatically vary between individual plants...
  16. ncbi request reprint Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands
    Simone I Böer
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Bremen, Germany
    ISME J 3:780-91. 2009
    ..Principal ecosystem functions such as benthic oxygen consumption and extracellular hydrolysis of organic matter were, however, at a high level at all times, indicating functional redundancy in the microbial communities...
  17. doi request reprint Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean
    Regina Schauer
    Department of Microbiology, Max Planck Institute for Marine Microbiology, Bremen, Germany
    ISME J 4:159-70. 2010
    ....
  18. pmc Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil
    Janette L Jacobs
    Department of Plant Pathology, Michigan State University, 62 PBL, East Lansing, MI 48824, USA
    Appl Environ Microbiol 74:3121-9. 2008
    ..cepacia complex species colonize the onion rhizosphere and have the potential to cause sour skin rot disease of onion. In addition, the onion rhizosphere is a natural habitat and a potential environmental source of B. cenocepacia...
  19. doi request reprint Inter- and intra-habitat bacterial diversity associated with cold-water corals
    Sandra Schöttner
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Bremen, Germany
    ISME J 3:756-9. 2009
    ..These findings strongly indicate characteristic coral-microbe associations and, furthermore, suggest that the variety of coral-generated habitats within reef systems promotes microbial diversity in the deep ocean...
  20. pmc Improved dsrA-based terminal restriction fragment length polymorphism analysis of sulfate-reducing bacteria
    DANIEL SANTILLANO
    Microbial habitat group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Appl Environ Microbiol 76:5308-11. 2010
    ..A new reverse primer that increased allelic diversity estimates up to 5-fold was applied to hydrocarbon seep samples to examine the relationship between guild activity and diversity...
  21. pmc The bacterial species definition in the genomic era
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Philos Trans R Soc Lond B Biol Sci 361:1929-40. 2006
    ....
  22. pmc Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
    Patrick S G Chain
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Proc Natl Acad Sci U S A 103:15280-7. 2006
    ....
  23. pmc Toward a more robust assessment of intraspecies diversity, using fewer genetic markers
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA
    Appl Environ Microbiol 72:7286-93. 2006
    ..Our results are reproducible within the Salmonella, Burkholderia, and Shewanella groups and therefore are expected to have general applicability for microevolution studies, including metagenomic surveys...
  24. ncbi request reprint Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species
    George W Payne
    Cardiff School of Biosciences, Cardiff University, Cardiff, Wales, UK
    FEMS Microbiol Lett 259:126-32. 2006
    ....
  25. ncbi request reprint Genetic diversity and biocontrol potential of fluorescent pseudomonads producing phloroglucinols and hydrogen cyanide from Swiss soils naturally suppressive or conducive to Thielaviopsis basicola-mediated black root rot of tobacco
    Alban Ramette
    Phytopathology Group, Institute of Plant Sciences, Swiss Federal Institute of Technology ETH, Zurich, Switzerland
    FEMS Microbiol Ecol 55:369-81. 2006
    ....