Philipp W Messer

Summary

Affiliation: Max Planck Institute for Molecular Genetics
Country: Germany

Publications

  1. ncbi CorGen--measuring and generating long-range correlations for DNA sequence analysis
    Philipp W Messer
    Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany
    Nucleic Acids Res 34:W692-5. 2006
  2. ncbi The majority of recent short DNA insertions in the human genome are tandem duplications
    Philipp W Messer
    Max Planck Institute for Molecular Genetics, Berlin, Germany
    Mol Biol Evol 24:1190-7. 2007
  3. ncbi Effects of long-range correlations in DNA on sequence alignment score statistics
    Philipp W Messer
    Max Planck Institute for Molecular Genetics, Berlin, Germany
    J Comput Biol 14:655-68. 2007
  4. ncbi Solvable sequence evolution models and genomic correlations
    Philipp W Messer
    Institute for Theoretical Physics, University of Cologne, , Germany
    Phys Rev Lett 94:138103. 2005

Detail Information

Publications4

  1. ncbi CorGen--measuring and generating long-range correlations for DNA sequence analysis
    Philipp W Messer
    Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany
    Nucleic Acids Res 34:W692-5. 2006
    ..We use an expansion-randomization dynamics to efficiently generate the correlated random sequences. The server is available at http://corgen.molgen.mpg.de...
  2. ncbi The majority of recent short DNA insertions in the human genome are tandem duplications
    Philipp W Messer
    Max Planck Institute for Molecular Genetics, Berlin, Germany
    Mol Biol Evol 24:1190-7. 2007
    ....
  3. ncbi Effects of long-range correlations in DNA on sequence alignment score statistics
    Philipp W Messer
    Max Planck Institute for Molecular Genetics, Berlin, Germany
    J Comput Biol 14:655-68. 2007
    ..The significance of measured alignment scores will therefore change upon incorporation of the correlations in the null model. We discuss the magnitude of this effect in a biological context...
  4. ncbi Solvable sequence evolution models and genomic correlations
    Philipp W Messer
    Institute for Theoretical Physics, University of Cologne, , Germany
    Phys Rev Lett 94:138103. 2005
    ..These results are obtained analytically and by simulations. They are compared with the long-range correlations observed in genomic DNA, and the implications for genome evolution are discussed...