Research Topics
| Michael KubeSummaryAffiliation: Max Planck Institute for Molecular Genetics Country: Germany Publications
| Collaborators
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Detail Information
Publications
Classification and identification of bacteria by mass spectrometry and computational analysisSascha Sauer
Max Planck Institute for Molecular Genetics, Berlin, Germany
PLoS ONE 3:e2843. 2008..Novel technologies for bacterial detection and analysis can therefore help microbiologists in minimising their efforts in developing a number of microbiological applications...- A second generation genetic map of the bumblebee Bombus terrestris (Linnaeus, 1758) reveals slow genome and chromosome evolution in the ApidaeEckart Stolle
Institut fur Biologie, Martin Luther Universitat Halle Wittenberg, Halle Saale, Germany
BMC Genomics 12:48. 2011..This genome-wide comparison allows insights into structural conservations and rearrangements and thus the evolution on a chromosomal level... - Analysis of a normalised expressed sequence tag (EST) library from a key pollinator, the bumblebee Bombus terrestrisBen M Sadd
Institute of Integrative Biology IBZ, ETH Zurich, Universitatsstrasse 16, 8092 Zurich, Switzerland
BMC Genomics 11:110. 2010..The objective of this project was to create a B. terrestris EST resource that will prove to be valuable in obtaining a deeper understanding of this significant social insect... - Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST librariesMelody S Clark
British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
BMC Genomics 8:475. 2007..The aim of this project was to generate clones and sequence data in the form of ESTs to provide a platform for the future molecular characterisation of the processes involved in protective dehydration... - Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilisNadav Y Denekamp
Israel Oceanographic and Limnological Research, Haifa 31080, Israel
BMC Genomics 10:108. 2009..The aim of this study was to generate Expressed Sequence Tags (ESTs) for molecular characterisation of processes associated with the formation of resting eggs, their survival during dormancy and hatching... - Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromonesNikolay N Kolmakov
Centro de Ciencias do Mar, Universidade do Algarve, Campus de Gambelas, 8005 139 Faro, Portugal
BMC Genomics 9:429. 2008.... 
The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus ErwiniaMichael Kube
Max Planck Institute for Molecular Genetics, Berlin, Germany
Environ Microbiol 10:2211-22. 2008..The presence of other virulence-associated factors in strain Et1/99 indicates the ancestral genomic background of many plant-associated bacteria...- Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliaeMichael Kube
Max Planck Institute for Molecular Genetics, htpt group, Ihnestr, 63, D 14195 Berlin, Germany
BMC Genomics 11:393. 2010..The presence of genes that are putatively involved in virulence in E. amylovora and E. pyrifoliae is of special interest for these species in consequence... - The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'Michael Kube
Max Planck Institute for Molecular Genetics, Ihnestr, 63, D 14195 Berlin, Germany
BMC Genomics 9:306. 2008..All mycoplasmas, including strains of 'Candidatus (Ca.) Phytoplasma asteris' and 'Ca. P. australiense', examined so far have circular chromosomes, as is the case for almost all walled bacteria... 
Analyses of the vrl gene cluster in Desulfococcus multivorans: homologous to the virulence-associated locus of the ovine footrot pathogen Dichelobacter nodosus strain A198Florian Knaust
Max Planck Institute for Molecular Genetics, Berlin, Germany
J Mol Microbiol Biotechnol 13:156-64. 2007..The latter is supported by the evidence for expression of the vrl genes in D. multivorans, which has not been described as pathogen or to be associated to any disease pattern before...- A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea matsMichael Kube
Max Planck Institut fir Molekulare Genetik, Ihnestr. 73, D-14129 Berlin, Germany
Syst Appl Microbiol 28:287-94. 2005.... - Genes involved in the anaerobic degradation of ethylbenzene in a denitrifying bacterium, strain EbN1Ralf Rabus
Max Planck Institut für Marine Mikrobiologie, Celsiusstrasse 1, 28359 Bremen, Germany
Arch Microbiol 178:506-16. 2002..The DNA fragment also included genes for regulatory systems; these were two sets of two-component systems, two LysR homologs, and a TetR homolog. Some of these proteins may be involved in ethylbenzene-dependent gene expression... - Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome islandSabrina Schübbe
Max Planck Institut für Marine Mikrobiologie, 28359 Bremen, Germany
J Bacteriol 185:5779-90. 2003..Overall, these findings suggest the existence of a putative large magnetosome island in M. gryphiswaldense and other magnetotactic bacteria... - Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and functionMichael Richter
Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
J Bacteriol 189:4899-910. 2007.... - Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphereChristoph Erkel
Max-Planck-Institute for Terrestrial Microbiology, Karl-von-Frisch-Strasse, 35043 Marburg, Germany
Science 313:370-2. 2006.... - Genome analysis of the platypus reveals unique signatures of evolutionWesley C Warren
Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
Nature 453:175-83. 2008..Sequencing of this genome now provides a valuable resource for deep mammalian comparative analyses, as well as for monotreme biology and conservation... - Genes involved in the anaerobic degradation of toluene in a denitrifying bacterium, strain EbN1Michael Kube
Max Planck Institut fur Molekulare Genetik, Ihnestrasse 73, 14195 Berlin, Germany
Arch Microbiol 181:182-94. 2004..The genes between the bss and bbs operons and in the flanking regions differ between strain EbN1 and the other strains... - Insights into the genomes of archaea mediating the anaerobic oxidation of methaneAnke Meyerdierks
Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
Environ Microbiol 7:1937-51. 2005.... - First genome data from uncultured upland soil cluster alpha methanotrophs provide further evidence for a close phylogenetic relationship to Methylocapsa acidiphila B2 and for high-affinity methanotrophy involving particulate methane monooxygenasePeter Ricke
Max Planck Institut fur terrestrische Mikrobiologie, Karl von Frisch Str, D 35043 Marburg, Germany
Appl Environ Microbiol 71:7472-82. 2005..A comparative analysis of the pmo operons of USC alpha and M. acidiphila corroborated previous reports that both the pmo operon structure and the predicted secondary structure of deduced pMMO are highly conserved among all MB... - A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growthSusanne Ullrich
, Celsiusstr. 1, 28359 Bremen, Germany
J Bacteriol 187:7176-84. 2005..This can be interpreted in terms of adaptation to physiological stress and might contribute to the genetic plasticity and mobilization of the magnetosome island... - Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transferMarc Mussmann
Max Planck Institute for Marine Microbiology, Celsiusstr 1, D 28359 Bremen, Germany
J Bacteriol 187:7126-37. 2005..The acquisition of an optimized gene set would enormously facilitate a successful implementation of a novel pathway... - The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1Ralf Rabus
Max Planck Institut für Marine Mikrobiologie, Celsiusstrasse 1, 28359, Bremen, Germany
Arch Microbiol 183:27-36. 2005..Supplementary material on sequence and annotation are provided at the Web page http://www.micro-genomes.mpg.de/ebn1/... - Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1Michael Kube
, Ihnestr. 63-73, 14195 Berlin-Dahlem, Germany
Nat Biotechnol 23:1269-73. 2005.... - Substrate-dependent regulation of anaerobic degradation pathways for toluene and ethylbenzene in a denitrifying bacterium, strain EbN1Simon Kühner
Max Planck Institute for Marine Microbiology, Celsiusstr 1, 28359 Bremen, Germany
J Bacteriol 187:1493-503. 2005.... - SNP and haplotype mapping for genetic analysis in the ratKathrin Saar
Max Delbruck Center for Molecular Medicine, Robert Rossle Strae 10, 13125 Berlin, Germany
Nat Genet 40:560-6. 2008..We provide a detailed SNP map and demonstrate its utility for mapping of quantitative trait loci. This community resource is openly available and augments the genetic tools for this workhorse of physiological studies... - EST sequencing of Onychophora and phylogenomic analysis of MetazoaFalko Roeding
Institute of Zoology and Zoological Museum, University of Hamburg, D 20146 Hamburg, Germany
Mol Phylogenet Evol 45:942-51. 2007..In agreement with previous studies, we have demonstrated that random sequencing of cDNAs results in sequence information suitable for phylogenomic approaches to resolve metazoan relationships... - The DNA sequence, annotation and analysis of human chromosome 3Donna M Muzny
Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA
Nature 440:1194-8. 2006.... - Retrieval of first genome data for rice cluster I methanogens by a combination of cultivation and molecular techniquesChristoph Erkel
, Marburg, Germany
FEMS Microbiol Ecol 53:187-204. 2005..Trees exemplarily computed for the deduced amino acid sequences of eIF2a, dnaG, and priA corroborated a specific phylogenetic association of RC-I with the Methanosarcinales... - Towards the proteome of the marine bacterium Rhodopirellula baltica: mapping the soluble proteinsDörte Gade
Max Planck Institute for Marine Microbiology, Bremen, Germany
Proteomics 5:3654-71. 2005..The 2-DE reference map presented here will serve as framework for further experiments to study differential gene expression of R. baltica in response to external stimuli or cellular development and compartmentalization... - The genome of the kinetoplastid parasite, Leishmania majorAlasdair C Ivens
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK
Science 309:436-42. 2005..Abundant RNA-binding proteins are encoded in the Tritryp genomes, consistent with active posttranscriptional regulation of gene expression... - Inactivation of the flagellin gene flaA in Magnetospirillum gryphiswaldense results in nonmagnetotactic mutants lacking flagellar filamentsDaniel Schultheiss
Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
Appl Environ Microbiol 70:3624-31. 2004..The techniques described in this paper will make it possible to take full advantage of the forthcoming genome sequences of M. gryphiswaldense and other magnetotactic bacteria... - Comparative analysis of the conventional and novel pmo (particulate methane monooxygenase) operons from methylocystis strain SC2Peter Ricke
Max Planck Institut fur terrestrische Mikrobiologie, D 35043 Marburg, Germany
Appl Environ Microbiol 70:3055-63. 2004..Immediately upstream of the transcriptional start sites of both pmoCAB1 and pmoCAB2, sequence motifs similar to Escherichia coli sigma(70) promoters were identified... - A conspicuous nickel protein in microbial mats that oxidize methane anaerobicallyMartin Krüger
Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
Nature 426:878-81. 2003..Sequence analyses revealed similarities to methyl-coenzyme M reductase from methanogenic archaea. The abundance of the nickel protein (7% of extracted proteins) in the mat suggests an important role in AOM... - Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approachRalf Rabus
Max Planck Institut für Marine Mikrobiologie, Bremen, Germany
Proteomics 2:649-55. 2002..Thus the coding genes of three proteins expressed during growth of Pirellula sp. strain 1 on carbohydrates were identified and related by sequence similarity to carbohydrate metabolism...