Atanas Kamburov

Summary

Affiliation: Max Planck Institute for Molecular Genetics
Country: Germany

Publications

  1. pmc The ConsensusPathDB interaction database: 2013 update
    Atanas Kamburov
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestrasse 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 41:D793-800. 2013
  2. pmc Cluster-based assessment of protein-protein interaction confidence
    Atanas Kamburov
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Ihnestr, 63 73, Germany
    BMC Bioinformatics 13:262. 2012
  3. pmc IntScore: a web tool for confidence scoring of biological interactions
    Atanas Kamburov
    Vertebrate Genomics Department and Otto Warburg Laboratory, Max Planck Institute for Molecular Genetics, Ihnestrasse 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 40:W140-6. 2012
  4. pmc ConsensusPathDB--a database for integrating human functional interaction networks
    Atanas Kamburov
    Max Planck Institute for Molecular Genetics, Ihnestr 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 37:D623-8. 2009
  5. pmc ConsensusPathDB: toward a more complete picture of cell biology
    Atanas Kamburov
    Vertebrate Genomics Department, Max Planck Institute for Molecular Genetics, Ihnestr 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 39:D712-7. 2011
  6. doi request reprint Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
    Atanas Kamburov
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany
    Bioinformatics 27:2917-8. 2011
  7. pmc DIPSBC--data integration platform for systems biology collaborations
    Felix Dreher
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr 63 73, 14195 Berlin, Germany
    BMC Bioinformatics 13:85. 2012
  8. doi request reprint Dynamic protein-protein interaction wiring of the human spliceosome
    Anna Hegele
    Otto Warburg Laboratory, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany
    Mol Cell 45:567-80. 2012
  9. pmc Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape
    Konstantin Pentchev
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestrasse 63 73, Berlin, Germany
    Bioinformatics 26:2796-7. 2010
  10. pmc Human embryonic stem cell derived hepatocyte-like cells as a tool for in vitro hazard assessment of chemical carcinogenicity
    Reha Yildirimman
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, D 14195 Berlin, Germany
    Toxicol Sci 124:278-90. 2011

Collaborators

Detail Information

Publications12

  1. pmc The ConsensusPathDB interaction database: 2013 update
    Atanas Kamburov
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestrasse 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 41:D793-800. 2013
    ..To facilitate the interactive, visual interpretation of interaction and pathway data, we have re-implemented the graph visualization feature of ConsensusPathDB using the Cytoscape.js library...
  2. pmc Cluster-based assessment of protein-protein interaction confidence
    Atanas Kamburov
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Ihnestr, 63 73, Germany
    BMC Bioinformatics 13:262. 2012
    ..While being certainly useful, such additional data are not always available and may introduce additional bias and ambiguity...
  3. pmc IntScore: a web tool for confidence scoring of biological interactions
    Atanas Kamburov
    Vertebrate Genomics Department and Otto Warburg Laboratory, Max Planck Institute for Molecular Genetics, Ihnestrasse 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 40:W140-6. 2012
    ..IntScore is user-friendly and extensively documented. It is freely available at http://intscore.molgen.mpg.de...
  4. pmc ConsensusPathDB--a database for integrating human functional interaction networks
    Atanas Kamburov
    Max Planck Institute for Molecular Genetics, Ihnestr 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 37:D623-8. 2009
    ..The ConsensusPathDB database is available at: http://cpdb.molgen.mpg.de...
  5. pmc ConsensusPathDB: toward a more complete picture of cell biology
    Atanas Kamburov
    Vertebrate Genomics Department, Max Planck Institute for Molecular Genetics, Ihnestr 63 73, 14195 Berlin, Germany
    Nucleic Acids Res 39:D712-7. 2011
    ....
  6. doi request reprint Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
    Atanas Kamburov
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany
    Bioinformatics 27:2917-8. 2011
    ..The tool has been implemented both as an interactive website and as a web service to allow a programming interface...
  7. pmc DIPSBC--data integration platform for systems biology collaborations
    Felix Dreher
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr 63 73, 14195 Berlin, Germany
    BMC Bioinformatics 13:85. 2012
    ....
  8. doi request reprint Dynamic protein-protein interaction wiring of the human spliceosome
    Anna Hegele
    Otto Warburg Laboratory, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany
    Mol Cell 45:567-80. 2012
    ..Our data provide extensive information about the spliceosomal protein interaction network and its dynamics...
  9. pmc Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape
    Konstantin Pentchev
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestrasse 63 73, Berlin, Germany
    Bioinformatics 26:2796-7. 2010
    ....
  10. pmc Human embryonic stem cell derived hepatocyte-like cells as a tool for in vitro hazard assessment of chemical carcinogenicity
    Reha Yildirimman
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, D 14195 Berlin, Germany
    Toxicol Sci 124:278-90. 2011
    ....
  11. pmc Dual coordination of post translational modifications in human protein networks
    Jonathan Woodsmith
    Otto Warburg Laboratory, Max Planck Institute for Molecular Genetics MPIMG, Berlin, Germany
    PLoS Comput Biol 9:e1002933. 2013
    ..This study reveals two global PTM coordination mechanisms and emphasizes dataset integration as requisite in proteomic PTM studies to better predict modification impact on cellular signaling...
  12. pmc Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome
    Felix Dreher
    Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Ihnestr 63 73, 14195 Berlin, Germany
    Evol Bioinform Online 8:119-26. 2012
    ..The data can be visualized and downloaded from http://cpdb.molgen.mpg.de/pig...