Research Topics
| F O GlöcknerSummaryAffiliation: Max Planck Institute for Marine Microbiology Country: Germany Publications
| Collaborators
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Detail Information
Publications
Quantifying the effect of environment stability on the transcription factor repertoire of marine microbesIvaylo Kostadinov
Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
Microb Inform Exp 1:9. 2011..abstract:..- Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditionsPatricia Wecker
Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Microbial Genomics Group, Celsiusstr 1, Bremen 28359, Germany
BMC Genomics 10:410. 2009..Its adaptation to environmental stressors was studied by transcriptional profiling using a whole genome microarray... - MetaLook: a 3D visualisation software for marine ecological genomicsThierry Lombardot
Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
BMC Bioinformatics 8:406. 2007..g. water depth, physical and chemical parameters. The creation of specialised software tools and databases is requisite to allow this new kind of integrated analysis... - MetaMine--a tool to detect and analyse gene patterns in their environmental contextUta Bohnebeck
ttz Bremerhaven, Bremerhaven, Germany
BMC Bioinformatics 9:459. 2008..MetaMine was developed to approach the large pool of unclassified proteins by searching for recurrent gene patterns across habitats based on key genes... - TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequencesHanno Teeling
Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
BMC Bioinformatics 5:163. 2004..With this application in mind, the TETRA web-service and the TETRA stand-alone program have been developed, both of which automate the task of comparative tetranucleotide frequency analysis. Availability: http://www.megx.net/tetra... - JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomesMichael Richter
Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
BMC Bioinformatics 9:177. 2008.... - Graphical representation of ribosomal RNA probe accessibility data using ARB software packageYadhu Kumar
Lehrstuhl fur Mikrobiologie, Technische Universitat Munchen, D 85350 Freising, Germany
BMC Bioinformatics 6:61. 2005..Careful in silico design and evaluation of potential oligonucleotide probe targets is therefore crucial for performing successful hybridization experiments... - MetaBar - a tool for consistent contextual data acquisition and standards compliant submissionWolfgang Hankeln
Max Planck Institute for Marine Microbiology, Bremen, Germany
BMC Bioinformatics 11:358. 2010..The consistent capture and structured submission of these data is crucial for integrated data analysis and ecosystems modeling. The application MetaBar has been developed, to support consistent contextual data acquisition... - Marine microbial genomics in Europe: current status and perspectivesFrank Oliver Glöckner
Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
Microb Biotechnol 3:523-30. 2010..Marine ecosystems research is complex and challenging, but it also harbours the opportunity to cross the borders between disciplines and countries to finally create a rewarding marine research era that is more than the sum of its parts... - Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteriaF O Glöckner
Max Planck Institut für Marine Mikrobiologie, Bremen, Germany
Appl Environ Microbiol 66:5053-65. 2000.... - Complete genome sequence of the marine planctomycete Pirellula sp. strain 1F O Glöckner
Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
Proc Natl Acad Sci U S A 100:8298-303. 2003..Phylogenetic analysis of all relevant markers clearly affiliates the Planctomycetales to the domain Bacteria as a distinct phylum, but a deepest branching is not supported by our analyses... - Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous cultureJ Pernthaler
Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
Appl Environ Microbiol 67:2145-55. 2001..The community structure of pelagic microbial assemblages can therefore be influenced by the taxonomic composition of the predator community... - Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probesB M Fuchs
Max Planck Institut für Marine Mikrobiologie, D 28359 Bremen, Germany
Appl Environ Microbiol 66:3603-7. 2000..We conclude that helpers can open inaccessible rRNA regions for FISH with oligonucleotide probes and will thereby further improve the applicability of this technique for in situ identification of microorganisms... 
Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probesD Gade
Max Planck Institut für Marine Mikrobiologie, Celsiusstr 1, D 28359 Bremen, Germany
Microb Ecol 47:243-51. 2004..An unexpected result was the close phylogenetic relationship of the isolate from the sponge and the brackish water habitat Kiel Fjord as revealed by DNA/DNA hybridization...