F O Glöckner

Summary

Affiliation: Max Planck Institute for Marine Microbiology
Country: Germany

Publications

  1. pmc Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes
    Ivaylo Kostadinov
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Microb Inform Exp 1:9. 2011
  2. pmc Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions
    Patricia Wecker
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Microbial Genomics Group, Celsiusstr 1, Bremen 28359, Germany
    BMC Genomics 10:410. 2009
  3. pmc MetaLook: a 3D visualisation software for marine ecological genomics
    Thierry Lombardot
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
    BMC Bioinformatics 8:406. 2007
  4. pmc MetaMine--a tool to detect and analyse gene patterns in their environmental context
    Uta Bohnebeck
    ttz Bremerhaven, Bremerhaven, Germany
    BMC Bioinformatics 9:459. 2008
  5. pmc TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
    Hanno Teeling
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
    BMC Bioinformatics 5:163. 2004
  6. pmc JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
    Michael Richter
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
    BMC Bioinformatics 9:177. 2008
  7. pmc Graphical representation of ribosomal RNA probe accessibility data using ARB software package
    Yadhu Kumar
    Lehrstuhl fur Mikrobiologie, Technische Universitat Munchen, D 85350 Freising, Germany
    BMC Bioinformatics 6:61. 2005
  8. pmc MetaBar - a tool for consistent contextual data acquisition and standards compliant submission
    Wolfgang Hankeln
    Max Planck Institute for Marine Microbiology, Bremen, Germany
    BMC Bioinformatics 11:358. 2010
  9. pmc Complete genome sequence of the marine planctomycete Pirellula sp. strain 1
    F O Glöckner
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
    Proc Natl Acad Sci U S A 100:8298-303. 2003
  10. pmc Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
    F O Glöckner
    Max Planck Institut für Marine Mikrobiologie, Bremen, Germany
    Appl Environ Microbiol 66:5053-65. 2000

Collaborators

Detail Information

Publications15

  1. pmc Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes
    Ivaylo Kostadinov
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Microb Inform Exp 1:9. 2011
    ..abstract:..
  2. pmc Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions
    Patricia Wecker
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Microbial Genomics Group, Celsiusstr 1, Bremen 28359, Germany
    BMC Genomics 10:410. 2009
    ..Its adaptation to environmental stressors was studied by transcriptional profiling using a whole genome microarray...
  3. pmc MetaLook: a 3D visualisation software for marine ecological genomics
    Thierry Lombardot
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
    BMC Bioinformatics 8:406. 2007
    ..g. water depth, physical and chemical parameters. The creation of specialised software tools and databases is requisite to allow this new kind of integrated analysis...
  4. pmc MetaMine--a tool to detect and analyse gene patterns in their environmental context
    Uta Bohnebeck
    ttz Bremerhaven, Bremerhaven, Germany
    BMC Bioinformatics 9:459. 2008
    ..MetaMine was developed to approach the large pool of unclassified proteins by searching for recurrent gene patterns across habitats based on key genes...
  5. pmc TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
    Hanno Teeling
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
    BMC Bioinformatics 5:163. 2004
    ..With this application in mind, the TETRA web-service and the TETRA stand-alone program have been developed, both of which automate the task of comparative tetranucleotide frequency analysis. Availability: http://www.megx.net/tetra...
  6. pmc JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
    Michael Richter
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
    BMC Bioinformatics 9:177. 2008
    ....
  7. pmc Graphical representation of ribosomal RNA probe accessibility data using ARB software package
    Yadhu Kumar
    Lehrstuhl fur Mikrobiologie, Technische Universitat Munchen, D 85350 Freising, Germany
    BMC Bioinformatics 6:61. 2005
    ..Careful in silico design and evaluation of potential oligonucleotide probe targets is therefore crucial for performing successful hybridization experiments...
  8. pmc MetaBar - a tool for consistent contextual data acquisition and standards compliant submission
    Wolfgang Hankeln
    Max Planck Institute for Marine Microbiology, Bremen, Germany
    BMC Bioinformatics 11:358. 2010
    ..The consistent capture and structured submission of these data is crucial for integrated data analysis and ecosystems modeling. The application MetaBar has been developed, to support consistent contextual data acquisition...
  9. pmc Complete genome sequence of the marine planctomycete Pirellula sp. strain 1
    F O Glöckner
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
    Proc Natl Acad Sci U S A 100:8298-303. 2003
    ..Phylogenetic analysis of all relevant markers clearly affiliates the Planctomycetales to the domain Bacteria as a distinct phylum, but a deepest branching is not supported by our analyses...
  10. pmc Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
    F O Glöckner
    Max Planck Institut für Marine Mikrobiologie, Bremen, Germany
    Appl Environ Microbiol 66:5053-65. 2000
    ....
  11. pmc Marine microbial genomics in Europe: current status and perspectives
    Frank Oliver Glöckner
    Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D 28359 Bremen, Germany
    Microb Biotechnol 3:523-30. 2010
    ..Marine ecosystems research is complex and challenging, but it also harbours the opportunity to cross the borders between disciplines and countries to finally create a rewarding marine research era that is more than the sum of its parts...
  12. pmc Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture
    J Pernthaler
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D 28359 Bremen, Germany
    Appl Environ Microbiol 67:2145-55. 2001
    ..The community structure of pelagic microbial assemblages can therefore be influenced by the taxonomic composition of the predator community...
  13. ncbi request reprint The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments
    R Rabus
    Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
    Environ Microbiol 6:887-902. 2004
    ..psychrophila's genome features with those of the only other published genome from a sulfate reducer, the hyperthermophilic archaeon Archaeoglobus fulgidus, revealed many striking differences, but only a few shared features...
  14. pmc Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
    B M Fuchs
    Max Planck Institut für Marine Mikrobiologie, D 28359 Bremen, Germany
    Appl Environ Microbiol 66:3603-7. 2000
    ..We conclude that helpers can open inaccessible rRNA regions for FISH with oligonucleotide probes and will thereby further improve the applicability of this technique for in situ identification of microorganisms...
  15. ncbi request reprint Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes
    D Gade
    Max Planck Institut für Marine Mikrobiologie, Celsiusstr 1, D 28359 Bremen, Germany
    Microb Ecol 47:243-51. 2004
    ..An unexpected result was the close phylogenetic relationship of the isolate from the sponge and the brackish water habitat Kiel Fjord as revealed by DNA/DNA hybridization...