Irit Gat-Viks

Summary

Affiliation: Max Planck Institute for Molecular Genetics
Country: Germany

Publications

  1. pmc MetaReg: a platform for modeling, analysis and visualization of biological systems using large-scale experimental data
    Igor Ulitsky
    School of Computer Science, Tel Aviv University, Tel Aviv 69978, Israel
    Genome Biol 9:R1. 2008
  2. pmc Evidence for gene-specific rather than transcription rate-dependent histone H3 exchange in yeast coding regions
    Irit Gat-Viks
    Computational Molecular Biology Department, Max Planck Institute for Molecular Genetics, Berlin, Germany
    PLoS Comput Biol 5:e1000282. 2009
  3. pmc Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data
    Ewa Szczurek
    Computational Molecular Biology Department, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany
    BMC Bioinformatics 12:249. 2011
  4. pmc Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments
    Ewa Szczurek
    Computational Molecular Biology Department, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany
    Mol Syst Biol 5:287. 2009

Collaborators

Detail Information

Publications4

  1. pmc MetaReg: a platform for modeling, analysis and visualization of biological systems using large-scale experimental data
    Igor Ulitsky
    School of Computer Science, Tel Aviv University, Tel Aviv 69978, Israel
    Genome Biol 9:R1. 2008
    ..By summarizing prior knowledge and providing visual and computational aids, it helps the expert explore and understand her system better...
  2. pmc Evidence for gene-specific rather than transcription rate-dependent histone H3 exchange in yeast coding regions
    Irit Gat-Viks
    Computational Molecular Biology Department, Max Planck Institute for Molecular Genetics, Berlin, Germany
    PLoS Comput Biol 5:e1000282. 2009
    ..Therefore, our results that gene-specific coding region histone H3 exchange is decoupled from transcription rate might hint at a new epigenetic mechanism of transcription regulation...
  3. pmc Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data
    Ewa Szczurek
    Computational Molecular Biology Department, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195 Berlin, Germany
    BMC Bioinformatics 12:249. 2011
    ..Accumulating knowledge about biological networks creates an opportunity to study these changes in their cellular context...
  4. pmc Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments
    Ewa Szczurek
    Computational Molecular Biology Department, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany
    Mol Syst Biol 5:287. 2009
    ..In comparison with other approaches, MEED suggested the most informative experiments for unambiguous identification of transcriptional regulation in this system...