Pawel Durek

Summary

Affiliation: Max Planck Institute of Molecular Plant Physiology
Country: Germany

Publications

  1. pmc The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles
    Pawel Durek
    Bioinformatics Group, Max Planck Institute for Molecular Plant Physiology, Am Muhlenberg 1, 14424 Potsdam Golm, Germany
    BMC Syst Biol 2:100. 2008
  2. pmc Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins
    Pawel Durek
    Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
    BMC Bioinformatics 10:117. 2009
  3. pmc Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana
    Diego Mauricio Riaño-Pachón
    Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg 1, 14476 Potsdam Golm, Germany
    BMC Genomics 11:411. 2010
  4. pmc PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
    Pawel Durek
    Max Planck Institut fur Molekulare Pflanzenphysiologie, Am Muhlenberg 1, 14476 Golm, Germany
    Nucleic Acids Res 38:D828-34. 2010
  5. doi request reprint Plant phosphoproteomics: an update
    Birgit Kersten
    Max Planck Institute for Molecular Plant Physiology, Potsdam Golm, Germany
    Proteomics 9:964-88. 2009
  6. pmc Metabolic pathway relationships revealed by an integrative analysis of the transcriptional and metabolic temperature stress-response dynamics in yeast
    Dirk Walther
    Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg 1, 14476 Potsdam Golm, Germany
    OMICS 14:261-74. 2010

Detail Information

Publications6

  1. pmc The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles
    Pawel Durek
    Bioinformatics Group, Max Planck Institute for Molecular Plant Physiology, Am Muhlenberg 1, 14424 Potsdam Golm, Germany
    BMC Syst Biol 2:100. 2008
    ....
  2. pmc Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins
    Pawel Durek
    Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
    BMC Bioinformatics 10:117. 2009
    ..Computational methods have focused primarily on extracting predictive features from the local, one-dimensional sequence information surrounding phosphorylation sites...
  3. pmc Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana
    Diego Mauricio Riaño-Pachón
    Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg 1, 14476 Potsdam Golm, Germany
    BMC Genomics 11:411. 2010
    ..The availability of large numbers of experimentally identified phosphorylation sites, and of natural variation datasets in Arabidopsis thaliana prompted us to analyze the effect of non-synonymous SNPs (nsSNPs) onto phosphorylation sites...
  4. pmc PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
    Pawel Durek
    Max Planck Institut fur Molekulare Pflanzenphysiologie, Am Muhlenberg 1, 14476 Golm, Germany
    Nucleic Acids Res 38:D828-34. 2010
    ..Finally, we have implemented functional annotation of proteins using MAPMAN ontology. These new developments make the PhosPhAt resource a useful and powerful tool for the scientific community as a whole beyond the plant sciences...
  5. doi request reprint Plant phosphoproteomics: an update
    Birgit Kersten
    Max Planck Institute for Molecular Plant Physiology, Potsdam Golm, Germany
    Proteomics 9:964-88. 2009
    ..This is a continuation of our comprehensive review series on plant phosphoproteomics...
  6. pmc Metabolic pathway relationships revealed by an integrative analysis of the transcriptional and metabolic temperature stress-response dynamics in yeast
    Dirk Walther
    Max Planck Institute of Molecular Plant Physiology, Am Muhlenberg 1, 14476 Potsdam Golm, Germany
    OMICS 14:261-74. 2010
    ..Selected examples are presented illustrating the intertwined relationships between metabolites and transcripts in the yeast temperature stress adaptation process...