Gernot Glockner

Summary

Affiliation: Institute of Molecular Biotechnology
Country: Germany

Publications

  1. pmc EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae)
    Andreas Simon
    Botanical Institute, University of Cologne, Gyrhofstr 15, 50931 Cologne, Germany
    BMC Plant Biol 6:2. 2006
  2. pmc Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins
    Martin Kollmar
    Abteilung NMR basierte Strukturbiologie, Max Planck Institut fur biophysikalische Chemie, Am Fabetaberg 11, D 37077 Gottingen, Germany
    BMC Genomics 4:47. 2003
  3. pmc The complex repeats of Dictyostelium discoideum
    G Glockner
    IMB Jena, Department of Genome Analysis, D 07745 Jena, Germany
    Genome Res 11:585-94. 2001
  4. pmc Comparative analysis of the Borrelia garinii genome
    G Glockner
    Genome Analysis, Institute for Molecular Biotechnology, Beutenbergstr 11, 07745 Jena, Germany
    Nucleic Acids Res 32:6038-46. 2004
  5. ncbi request reprint Sequence and analysis of chromosome 2 of Dictyostelium discoideum
    Gernot Glockner
    IMB Jena, Department of Genome Analysis, Beutenbergstr 11, 07745 Jena, Germany
    Nature 418:79-85. 2002
  6. ncbi request reprint DictyMOLD-a Dictyostelium discoideum genome browser database
    Marius Felder
    IMB Jena, Department of Genome Analysis Beutenbergstrasse 11, 07745 Jena, Germany
    Bioinformatics 21:696-7. 2005
  7. ncbi request reprint Gene organization features in A/T-rich organisms
    Karol Szafranski
    Department of Genome Analysis, Institute for Molecular Biotechnology Jena, Beutenbergstr 11, D 07745 Jena, Germany
    J Mol Evol 60:90-8. 2005
  8. ncbi request reprint GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness
    Alessandro Romualdi
    Biocomputing Group, Institute of Molecular Biotechnology, 07745 Jena, Germany
    Bioinformatics 21:3669-71. 2005
  9. pmc Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication
    Andrew J Heidel
    Leibniz Institute for Age Research Fritz Lipmann Institute, D 07745 Jena, Germany
    Genome Res 21:1882-91. 2011
  10. pmc Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity
    Gernot Glockner
    Genome Analysis Group, Leibniz Institute for Age Research Fritz Lipmann Institute, Beutenbergstr, 11, 07745 Jena, Germany
    BMC Genomics 7:211. 2006

Detail Information

Publications17

  1. pmc EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae)
    Andreas Simon
    Botanical Institute, University of Cologne, Gyrhofstr 15, 50931 Cologne, Germany
    BMC Plant Biol 6:2. 2006
    ....
  2. pmc Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins
    Martin Kollmar
    Abteilung NMR basierte Strukturbiologie, Max Planck Institut fur biophysikalische Chemie, Am Fabetaberg 11, D 37077 Gottingen, Germany
    BMC Genomics 4:47. 2003
    ..Subsequent studies revealed and classified the full set of members of the kinesin superfamily expressed by these organisms. For Dictyostelium discoideum, only five kinesin superfamily proteins (Kif's) have already been reported...
  3. pmc The complex repeats of Dictyostelium discoideum
    G Glockner
    IMB Jena, Department of Genome Analysis, D 07745 Jena, Germany
    Genome Res 11:585-94. 2001
    ..All elements show insertion preference into loci in which other elements of the same family reside. The analysis of the complex repeats is a valuable data resource for the ongoing assembly of whole D. discoideum chromosomes...
  4. pmc Comparative analysis of the Borrelia garinii genome
    G Glockner
    Genome Analysis, Institute for Molecular Biotechnology, Beutenbergstr 11, 07745 Jena, Germany
    Nucleic Acids Res 32:6038-46. 2004
    ..garinii genome. Thus, phenotypic differences between the two species could be attributable to the presence or absence of these two plasmids as well as to the potentially positively selected genes...
  5. ncbi request reprint Sequence and analysis of chromosome 2 of Dictyostelium discoideum
    Gernot Glockner
    IMB Jena, Department of Genome Analysis, Beutenbergstr 11, 07745 Jena, Germany
    Nature 418:79-85. 2002
    ..This analysis strengthens the view that the evolutionary position of D. discoideum is located before the branching of metazoa and fungi but after the divergence of the plant kingdom, placing it close to the base of metazoan evolution...
  6. ncbi request reprint DictyMOLD-a Dictyostelium discoideum genome browser database
    Marius Felder
    IMB Jena, Department of Genome Analysis Beutenbergstrasse 11, 07745 Jena, Germany
    Bioinformatics 21:696-7. 2005
    ..discoideum chromosomes 1 and 2 sequences together with related annotations. To visualise maps, sequences and annotations and to provide access for the scientific community a perl-based browser was developed...
  7. ncbi request reprint Gene organization features in A/T-rich organisms
    Karol Szafranski
    Department of Genome Analysis, Institute for Molecular Biotechnology Jena, Beutenbergstr 11, D 07745 Jena, Germany
    J Mol Evol 60:90-8. 2005
    ..Instead both the shift of the nucleotide usage in coding regions to A/T-rich codons and the longer intergenic regions make an equal contribution to the higher A/T content in this organism...
  8. ncbi request reprint GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness
    Alessandro Romualdi
    Biocomputing Group, Institute of Molecular Biotechnology, 07745 Jena, Germany
    Bioinformatics 21:3669-71. 2005
    ..With GenColors dedicated genome browsers containing a group of related genomes can be easily set up and maintained. It has been efficiently used for Borrelia garinii and is currently applied to various ongoing genome projects...
  9. pmc Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication
    Andrew J Heidel
    Leibniz Institute for Age Research Fritz Lipmann Institute, D 07745 Jena, Germany
    Genome Res 21:1882-91. 2011
    ..Phylogenetic dating using a concatenated data set and extensive loss of synteny indicate that DF, PP, and DD split from their last common ancestor at least 0.6 billion years ago...
  10. pmc Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity
    Gernot Glockner
    Genome Analysis Group, Leibniz Institute for Age Research Fritz Lipmann Institute, Beutenbergstr, 11, 07745 Jena, Germany
    BMC Genomics 7:211. 2006
    ....
  11. pmc Centromere sequence and dynamics in Dictyostelium discoideum
    Gernot Glockner
    Leibniz Institute for Age Research Fritz Lipmann Institute, Beutenbergstrasse 11, D 07745 Jena, Germany
    Nucleic Acids Res 37:1809-16. 2009
    ..In addition to insights into the centromere organization and dynamics of a protist eukaryote, this work also provides a starting point for the analysis of the evolution of centromere structures in social amoebas by comparative genomics...
  12. ncbi request reprint Identification and characterization of a new conjugation/type IVA secretion system (trb/tra) of Legionella pneumophila Corby localized on two mobile genomic islands
    Gernot Glockner
    Leibniz Institute for Age Research Fritz Lipmann Institute, D 07745 Jena, Germany
    Int J Med Microbiol 298:411-28. 2008
    ..Thus, we describe for the first time a mechanism that may explain the observed horizontal transfer of chromosomal DNA in Legionella...
  13. pmc GenColors-based comparative genome databases for small eukaryotic genomes
    Marius Felder
    Genome Analysis Group, Leibniz Institute for Age Research Fritz Lipmann Institute, Beutenbergstr 11, 07745 Jena, Germany
    Nucleic Acids Res 41:D692-9. 2013
    ..de) were set up. Both new resources open up a single entry point for related genomes for the amoebozoa and fungal research communities and other interested users. Comparative genomics approaches are greatly facilitated by these resources...
  14. pmc A first glimpse at the transcriptome of Physarum polycephalum
    Gernot Glockner
    Leibniz Institute for Age Research Fritz Lipmann Institute, Beutenbergstr, 11, D 07745 Jena, Germany
    BMC Genomics 9:6. 2008
    ..It now can be genetically manipulated, opening up the possibility of targeted functional analysis in this organism...
  15. pmc NKAP is a novel RS-related protein that interacts with RNA and RNA binding proteins
    Bhagyashri D Burgute
    Institute of Biochemistry I, Medical Faculty, Center for Molecular Medicine Cologne CMMC, 50931 Cologne Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases CECAD, University of Cologne, Cologne, Germany, Institute of Genetics, University of Cologne, 50931 Cologne, Germany and Leibniz Institute of Freshwater Ecology and Inland Fisheries, IGB, Muggelseedamm 301, 12587 Berlin, Germany
    Nucleic Acids Res 42:3177-93. 2014
    ..Our results reveal NKAP as nuclear speckle protein with roles in RNA splicing and processing. ..
  16. pmc High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research
    Kathrin Reichwald
    Leibniz Institute for Age Research Fritz Lipmann Institute, Beutenbergstr, 07745 Jena, Germany
    Genome Biol 10:R16. 2009
    ..Treatment with resveratrol and low temperature significantly extends the maximum life span. These features make N. furzeri a promising new vertebrate model for age research...
  17. ncbi request reprint Should the draft chimpanzee sequence be finished?
    Stefan Taudien
    Institut fur Molekulare Biotechnologie, Genomanalyse, Beutenbergstr 11, D 07743 Jena, Germany
    Trends Genet 22:122-5. 2006
    ..Although we suggest methods to reduce the number of such false positives efficiently, our study emphasizes the benefit expected from finishing the chimpanzee genome sequence...