Joachim von Eichborn

Summary

Affiliation: Humboldt University
Country: Germany

Publications

  1. ncbi Structural features and evolution of protein-protein interactions
    Joachim von Eichborn
    Structural Bioinformatics Group, Institute for Physiology, Charite University Medicine, Arnimallee 22, 14195 Berlin, Germany
    Genome Inform 22:1-10. 2010
  2. pmc PROMISCUOUS: a database for network-based drug-repositioning
    Joachim von Eichborn
    Charite Universitatsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Lindenberger Weg 80, 13125 Berlin, Germany
    Nucleic Acids Res 39:D1060-6. 2011
  3. doi Cobweb: a Java applet for network exploration and visualisation
    Joachim von Eichborn
    Structural Bioinformatics Group, Institute for Physiology, Charite Universitatsmedizin Berlin, Lindenberger Weg 80, 13125 Berlin, Germany
    Bioinformatics 27:1725-6. 2011
  4. pmc VaccImm: simulating peptide vaccination in cancer therapy
    Joachim von Eichborn
    Charite Universitatsmedizin Berlin, Institute for Physiology, Berlin, Germany
    BMC Bioinformatics 14:127. 2013
  5. pmc SuperTarget goes quantitative: update on drug-target interactions
    Nikolai Hecker
    Structural Bioinformatics Group, Institute for Physiology, Charite University Medicine Berlin, Lindenberger Weg 80, 13125 Berlin, Germany
    Nucleic Acids Res 40:D1113-7. 2012
  6. pmc SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations
    Joachim von Eichborn
    Structural Bioinformatics Group, Institute of Physiology, Charite University Medicine Berlin, Lindenberger Weg 80, 13125 Berlin, Germany
    Nucleic Acids Res 41:D834-40. 2013
  7. pmc Development of immune-specific interaction potentials and their application in the multi-agent-system VaccImm
    Anna Lena Woelke
    Institute for Physiology, Charite Universitatsmedizin Berlin, Berlin, Germany
    PLoS ONE 6:e23257. 2011
  8. pmc JAIL: a structure-based interface library for macromolecules
    Stefan Günther
    Institute of Molecular Biology and Bioinformatics, Charite University Medicine Berlin, Arnimallee 22, 14195 Berlin, Germany
    Nucleic Acids Res 37:D338-41. 2009

Detail Information

Publications8

  1. ncbi Structural features and evolution of protein-protein interactions
    Joachim von Eichborn
    Structural Bioinformatics Group, Institute for Physiology, Charite University Medicine, Arnimallee 22, 14195 Berlin, Germany
    Genome Inform 22:1-10. 2010
    ....
  2. pmc PROMISCUOUS: a database for network-based drug-repositioning
    Joachim von Eichborn
    Charite Universitatsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Lindenberger Weg 80, 13125 Berlin, Germany
    Nucleic Acids Res 39:D1060-6. 2011
    ..This network-based approach can provide a starting point for drug-repositioning. PROMISCUOUS is publicly available at http://bioinformatics.charite.de/promiscuous...
  3. doi Cobweb: a Java applet for network exploration and visualisation
    Joachim von Eichborn
    Structural Bioinformatics Group, Institute for Physiology, Charite Universitatsmedizin Berlin, Lindenberger Weg 80, 13125 Berlin, Germany
    Bioinformatics 27:1725-6. 2011
    ..Therefore, it allows new nodes to be interactively added to a network by querying a database on a server. The network constantly rearranges to provide the most meaningful topological view...
  4. pmc VaccImm: simulating peptide vaccination in cancer therapy
    Joachim von Eichborn
    Charite Universitatsmedizin Berlin, Institute for Physiology, Berlin, Germany
    BMC Bioinformatics 14:127. 2013
    ..However, peptide vaccination is a highly complicated treatment and currently many factors like the optimal number of epitopes are not known precisely. Therefore, it is necessary to evaluate how certain parameters influence the therapy...
  5. pmc SuperTarget goes quantitative: update on drug-target interactions
    Nikolai Hecker
    Structural Bioinformatics Group, Institute for Physiology, Charite University Medicine Berlin, Lindenberger Weg 80, 13125 Berlin, Germany
    Nucleic Acids Res 40:D1113-7. 2012
    ..SuperTarget is available at http://bioinformatics.charite.de/supertarget...
  6. pmc SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations
    Joachim von Eichborn
    Structural Bioinformatics Group, Institute of Physiology, Charite University Medicine Berlin, Lindenberger Weg 80, 13125 Berlin, Germany
    Nucleic Acids Res 41:D834-40. 2013
    ..Protein-protein interactions and drug-target interactions can be viewed as networks; corresponding PubMed IDs or sources are given...
  7. pmc Development of immune-specific interaction potentials and their application in the multi-agent-system VaccImm
    Anna Lena Woelke
    Institute for Physiology, Charite Universitatsmedizin Berlin, Berlin, Germany
    PLoS ONE 6:e23257. 2011
    ..In summary, the present work introduces immune-specific interaction potentials and their application to the agent-based model VaccImm which simulates peptide vaccination in cancer therapy...
  8. pmc JAIL: a structure-based interface library for macromolecules
    Stefan Günther
    Institute of Molecular Biology and Bioinformatics, Charite University Medicine Berlin, Arnimallee 22, 14195 Berlin, Germany
    Nucleic Acids Res 37:D338-41. 2009
    ..The download of the data sets supports numerous further investigations in macromolecular recognition. JAIL is publicly available at http://bioinformatics.charite.de/jail...