Matteo Barberis

Summary

Affiliation: Humboldt University
Country: Germany

Publications

  1. pmc What influences DNA replication rate in budding yeast?
    Thomas W Spiesser
    Theoretical Biophysics, Institute for Biology, Humboldt University Berlin, Berlin, Germany
    PLoS ONE 5:e10203. 2010
  2. pmc Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum?
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Invalidenstraβe 42, 10115 Berlin, Germany
    Curr Genomics 11:199-211. 2010
  3. ncbi request reprint Sic1 as a timer of Clb cyclin waves in the yeast cell cycle--design principle of not just an inhibitor
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Germany
    FEBS J 279:3386-410. 2012
  4. doi request reprint Sic1 plays a role in timing and oscillatory behaviour of B-type cyclins
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Berlin, Germany
    Biotechnol Adv 30:108-30. 2012
  5. doi request reprint A low number of SIC1 mRNA molecules ensures a low noise level in cell cycle progression of budding yeast
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Berlin, Germany
    Mol Biosyst 7:2804-12. 2011
  6. ncbi request reprint Kinetic modelling of DNA replication initiation in budding yeast
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Invalidenstraße 42, 10115 Berlin, Germany
    Genome Inform 24:1-20. 2010
  7. doi request reprint Molecular systems biology of Sic1 in yeast cell cycle regulation through multiscale modeling
    Matteo Barberis
    Institute for Biology, Humboldt University Berlin, Invalidenstr 42, 10115 Berlin, Germany
    Adv Exp Med Biol 736:135-67. 2012
  8. doi request reprint Unraveling interactions of cell cycle-regulating proteins Sic1 and B-type cyclins in living yeast cells: a FLIM-FRET approach
    Gabriele Schreiber
    Theoretical Biophysics, Department of Biology, Humboldt Universitat zu Berlin, Berlin, Germany
    FASEB J 26:546-54. 2012
  9. ncbi request reprint A variable fork rate affects timing of origin firing and S phase dynamics in Saccharomyces cerevisiae
    Adriana Supady
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Invalidenstraβe 42, 10115 Berlin, Germany
    J Biotechnol 168:174-84. 2013

Collaborators

Detail Information

Publications9

  1. pmc What influences DNA replication rate in budding yeast?
    Thomas W Spiesser
    Theoretical Biophysics, Institute for Biology, Humboldt University Berlin, Berlin, Germany
    PLoS ONE 5:e10203. 2010
    ..Despite the potential involvement of epigenetic factors, transcriptional regulation and nucleotide availability, the causes of differences in replication times during DNA synthesis have not been established satisfactorily, yet...
  2. pmc Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum?
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Invalidenstraβe 42, 10115 Berlin, Germany
    Curr Genomics 11:199-211. 2010
    ....
  3. ncbi request reprint Sic1 as a timer of Clb cyclin waves in the yeast cell cycle--design principle of not just an inhibitor
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Germany
    FEBS J 279:3386-410. 2012
    ..Here we review these findings, focusing on the design principle underlying the Clb module, which highlights the role of Sic1 in regulating phase-specific Cdk1/Clb activities...
  4. doi request reprint Sic1 plays a role in timing and oscillatory behaviour of B-type cyclins
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Berlin, Germany
    Biotechnol Adv 30:108-30. 2012
    ..Our results highlight an additional role for Sic1 in regulating Cdk1-Clb complexes, coordinating their appearance...
  5. doi request reprint A low number of SIC1 mRNA molecules ensures a low noise level in cell cycle progression of budding yeast
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Berlin, Germany
    Mol Biosyst 7:2804-12. 2011
    ..Thus, the results presented here provide novel insights into the influence that the mRNA amount and, indirectly, the transcription process exploit on cell cycle progression...
  6. ncbi request reprint Kinetic modelling of DNA replication initiation in budding yeast
    Matteo Barberis
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Invalidenstraße 42, 10115 Berlin, Germany
    Genome Inform 24:1-20. 2010
    ..Our results highlighted the link between activation of CDK and DDK and the step-by-step formation of both pre-RC and pre-IC, suggesting S-CDK (Cdk1-Clb5,6) to be the main regulator of the process...
  7. doi request reprint Molecular systems biology of Sic1 in yeast cell cycle regulation through multiscale modeling
    Matteo Barberis
    Institute for Biology, Humboldt University Berlin, Invalidenstr 42, 10115 Berlin, Germany
    Adv Exp Med Biol 736:135-67. 2012
    ..Through complementary experimentation and modeling, we suggest a mechanism that underlies Sic1 function in controlling temporal waves of cyclins to ensure correct timing of the phase-specific Cdk activities...
  8. doi request reprint Unraveling interactions of cell cycle-regulating proteins Sic1 and B-type cyclins in living yeast cells: a FLIM-FRET approach
    Gabriele Schreiber
    Theoretical Biophysics, Department of Biology, Humboldt Universitat zu Berlin, Berlin, Germany
    FASEB J 26:546-54. 2012
    ....
  9. ncbi request reprint A variable fork rate affects timing of origin firing and S phase dynamics in Saccharomyces cerevisiae
    Adriana Supady
    Institute for Biology, Theoretical Biophysics, Humboldt University Berlin, Invalidenstraβe 42, 10115 Berlin, Germany
    J Biotechnol 168:174-84. 2013
    ..Our results gain deeper insights into the temporal coordination of genome duplication, indicating that control of the replication fork rate is required for the timely origin firing during S phase. ..