Stanislav Kalinin

Summary

Affiliation: Heinrich Heine University
Country: Germany

Publications

  1. doi request reprint A toolkit and benchmark study for FRET-restrained high-precision structural modeling
    Stanislav Kalinin
    Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universität HHU, Dusseldorf, Germany
    Nat Methods 9:1218-25. 2012
  2. doi request reprint On the origin of broadening of single-molecule FRET efficiency distributions beyond shot noise limits
    Stanislav Kalinin
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitatsstrasse 1, Geb 26 32, 40225 Dusseldorf, Germany
    J Phys Chem B 114:6197-206. 2010
  3. doi request reprint Detection of structural dynamics by FRET: a photon distribution and fluorescence lifetime analysis of systems with multiple states
    Stanislav Kalinin
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitatsstrasse 1, Geb 26 32, 40225 Dusseldorf, Germany
    J Phys Chem B 114:7983-95. 2010
  4. ncbi request reprint Note: a 4 ns hardware photon correlator based on a general-purpose field-programmable gate array development board implemented in a compact setup for fluorescence correlation spectroscopy
    Stanislav Kalinin
    Institut für Physikalische Chemie, Lehrstuhl für Molekulare Physikalische Chemie, Heinrich Heine Universität, Universitätsstrasse 1, Geb 26 32 02, 40225 Düsseldorf, Germany
    Rev Sci Instrum 83:096105. 2012
  5. pmc dNTP-dependent conformational transitions in the fingers subdomain of Klentaq1 DNA polymerase: insights into the role of the "nucleotide-binding" state
    Paul J Rothwell
    Chair for Molecular Physical Chemistry, Heinrich Heine University, Universitätsstraβe 1, 40225 Dusseldorf, Germany
    J Biol Chem 288:13575-91. 2013
  6. doi request reprint Analyzing Förster resonance energy transfer with fluctuation algorithms
    Suren Felekyan
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Dusseldorf, Germany
    Methods Enzymol 519:39-85. 2013
  7. doi request reprint Accurate single-molecule FRET studies using multiparameter fluorescence detection
    Evangelos Sisamakis
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitatsstrasse 1, Dusseldorf, Germany
    Methods Enzymol 475:455-514. 2010
  8. doi request reprint Accurate distance determination of nucleic acids via Förster resonance energy transfer: implications of dye linker length and rigidity
    Simon Sindbert
    Institut für Physikalische Chemie, Lehrstuhl für Molekulare Physikalische Chemie, Heinrich Heine Universität, Düsseldorf, Germany
    J Am Chem Soc 133:2463-80. 2011
  9. pmc Filtered FCS: species auto- and cross-correlation functions highlight binding and dynamics in biomolecules
    Suren Felekyan
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitätsstraße 1, Geb 26 32 02, 40225 Dusseldorf, Germany
    Chemphyschem 13:1036-53. 2012

Collaborators

Detail Information

Publications9

  1. doi request reprint A toolkit and benchmark study for FRET-restrained high-precision structural modeling
    Stanislav Kalinin
    Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universität HHU, Dusseldorf, Germany
    Nat Methods 9:1218-25. 2012
    ..We used this hybrid approach to determine the formerly unknown configuration of the flexible single-strand template overhang...
  2. doi request reprint On the origin of broadening of single-molecule FRET efficiency distributions beyond shot noise limits
    Stanislav Kalinin
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitatsstrasse 1, Geb 26 32, 40225 Dusseldorf, Germany
    J Phys Chem B 114:6197-206. 2010
    ..Accounting for multiple acceptor states allowed the fitting of experimental E distributions, assuming a single fixed donor-acceptor distance...
  3. doi request reprint Detection of structural dynamics by FRET: a photon distribution and fluorescence lifetime analysis of systems with multiple states
    Stanislav Kalinin
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitatsstrasse 1, Geb 26 32, 40225 Dusseldorf, Germany
    J Phys Chem B 114:7983-95. 2010
    ..Finally these new techniques are compared with fluorescence correlation spectroscopy...
  4. ncbi request reprint Note: a 4 ns hardware photon correlator based on a general-purpose field-programmable gate array development board implemented in a compact setup for fluorescence correlation spectroscopy
    Stanislav Kalinin
    Institut für Physikalische Chemie, Lehrstuhl für Molekulare Physikalische Chemie, Heinrich Heine Universität, Universitätsstrasse 1, Geb 26 32 02, 40225 Düsseldorf, Germany
    Rev Sci Instrum 83:096105. 2012
    ..This inexpensive and compact solution with a very good performance can serve as a versatile platform for uses in education, applied sciences, and basic research...
  5. pmc dNTP-dependent conformational transitions in the fingers subdomain of Klentaq1 DNA polymerase: insights into the role of the "nucleotide-binding" state
    Paul J Rothwell
    Chair for Molecular Physical Chemistry, Heinrich Heine University, Universitätsstraβe 1, 40225 Dusseldorf, Germany
    J Biol Chem 288:13575-91. 2013
    ..Conformational selection plays a key role in the polymerase cycle...
  6. doi request reprint Analyzing Förster resonance energy transfer with fluctuation algorithms
    Suren Felekyan
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Dusseldorf, Germany
    Methods Enzymol 519:39-85. 2013
    ..Alternative fluctuation algorithms to study FRET dynamics are also briefly reviewed...
  7. doi request reprint Accurate single-molecule FRET studies using multiparameter fluorescence detection
    Evangelos Sisamakis
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitatsstrasse 1, Dusseldorf, Germany
    Methods Enzymol 475:455-514. 2010
    ..Furthermore, the broad time resolution (picoseconds to hours) of MFD allows for kinetic studies that resolve interconversion events between various subpopulations as a biomolecule of interest explores its structural energy landscape...
  8. doi request reprint Accurate distance determination of nucleic acids via Förster resonance energy transfer: implications of dye linker length and rigidity
    Simon Sindbert
    Institut für Physikalische Chemie, Lehrstuhl für Molekulare Physikalische Chemie, Heinrich Heine Universität, Düsseldorf, Germany
    J Am Chem Soc 133:2463-80. 2011
    ..A detailed analysis of possible orientation effects (κ(2) problem) indicates that, for short linkers and unknown local environments, additional κ(2)-related uncertainties are clearly outweighed by better defined dye positions...
  9. pmc Filtered FCS: species auto- and cross-correlation functions highlight binding and dynamics in biomolecules
    Suren Felekyan
    Institut fur Physikalische Chemie, Lehrstuhl fur Molekulare Physikalische Chemie, Heinrich Heine Universitat, Universitätsstraße 1, Geb 26 32 02, 40225 Dusseldorf, Germany
    Chemphyschem 13:1036-53. 2012
    ....