Oleg N Reva

Summary

Affiliation: Hannover Medical School
Country: Germany

Publications

  1. pmc Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns
    Oleg N Reva
    Klinische Forschergruppe, OE6711, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30625 Hanover, Germany
    BMC Bioinformatics 5:90. 2004
  2. ncbi request reprint Global features of the Alcanivorax borkumensis SK2 genome
    Oleg N Reva
    Klinische Forschergruppe, OE6711, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30625 Hannover, Germany
    Environ Microbiol 10:614-25. 2008
  3. doi request reprint Visualization of Pseudomonas genomic structure by abundant 8-14mer oligonucleotides
    Colin F Davenport
    Klinische Forschergruppe, OE 6711, Medizinische Hochschule Hannover, Hanover, Germany
    Environ Microbiol 11:1092-104. 2009
  4. pmc Functional genomics of stress response in Pseudomonas putida KT2440
    Oleg N Reva
    Klinische Forschergruppe, OE 6710, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30623 Hannover, Germany
    J Bacteriol 188:4079-92. 2006
  5. pmc Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
    Oleg N Reva
    Klinische Forschergruppe, OE6711, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30625 Hannover, Germany
    BMC Bioinformatics 6:251. 2005
  6. pmc The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage
    Hamilton Ganesan
    Dep of Biochemistry, Bioinformatics and Computational Biology Unit, University of Pretoria, Lynnwood Road, Hillcrest, Pretoria, 0002, South Africa
    BMC Bioinformatics 9:333. 2008
  7. ncbi request reprint Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.)
    Oleg N Reva
    Department of Antibiotics, Institute of Microbiology and Virology, Kiev, Ukraine
    Int J Syst Evol Microbiol 52:101-7. 2002

Detail Information

Publications7

  1. pmc Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns
    Oleg N Reva
    Klinische Forschergruppe, OE6711, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30625 Hanover, Germany
    BMC Bioinformatics 5:90. 2004
    ..In this paper we analyzed oligonucleotide usage (OU) biases in a comprehensive collection of 155 completely sequenced bacterial chromosomes, 316 plasmids and 104 phages...
  2. ncbi request reprint Global features of the Alcanivorax borkumensis SK2 genome
    Oleg N Reva
    Klinische Forschergruppe, OE6711, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30625 Hannover, Germany
    Environ Microbiol 10:614-25. 2008
    ....
  3. doi request reprint Visualization of Pseudomonas genomic structure by abundant 8-14mer oligonucleotides
    Colin F Davenport
    Klinische Forschergruppe, OE 6711, Medizinische Hochschule Hannover, Hanover, Germany
    Environ Microbiol 11:1092-104. 2009
    ..In the future of next-generation ultra-high throughput DNA sequencing, the composition of bacterial metagenomes may be quantified by scanning the primary sequence reads for these 8-14mer markers...
  4. pmc Functional genomics of stress response in Pseudomonas putida KT2440
    Oleg N Reva
    Klinische Forschergruppe, OE 6710, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30623 Hannover, Germany
    J Bacteriol 188:4079-92. 2006
    ..Adaptation of the membrane barrier, uptake of phosphate, maintenance of the intracellular pH and redox status, and translational control of metabolism are key mechanisms of the response of P. putida to abiotic stresses...
  5. pmc Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
    Oleg N Reva
    Klinische Forschergruppe, OE6711, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30625 Hannover, Germany
    BMC Bioinformatics 6:251. 2005
    ..We tested the usefulness of local oligonucleotide usage (OU) patterns to recognize and differentiate types of atypical oligonucleotide composition in DNA sequences of bacterial genomes...
  6. pmc The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage
    Hamilton Ganesan
    Dep of Biochemistry, Bioinformatics and Computational Biology Unit, University of Pretoria, Lynnwood Road, Hillcrest, Pretoria, 0002, South Africa
    BMC Bioinformatics 9:333. 2008
    ..The purpose of this research was to make OU statistical analysis available as a novel web-based tool for functional genomics and annotation. The tool is also available as a downloadable package...
  7. ncbi request reprint Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.)
    Oleg N Reva
    Department of Antibiotics, Institute of Microbiology and Virology, Kiev, Ukraine
    Int J Syst Evol Microbiol 52:101-7. 2002
    ..8%. It is concluded that the four strains belong to a novel species of Bacillus for which the name Bacillus endophyticus sp. nov. is proposed. The type strain is 2DT(T) (= UCM B-5715T = CIP 106778T)...