Jibin Sun

Summary

Affiliation: German Research Centre for Biotechnology
Country: Germany

Publications

  1. pmc IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence
    Jibin Sun
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, Braunschweig, 38124, Germany
    BMC Bioinformatics 5:112. 2004
  2. pmc Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics
    Jibin Sun
    Helmholtz Centre for Infection Research, Inhoffenstr, 38124 Braunschweig, Germany
    Genome Biol 8:R182. 2007
  3. ncbi request reprint A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis
    Jibin Sun
    Group Systems Biology, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    J Biotechnol 124:486-95. 2006
  4. pmc Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways
    Jibin Sun
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Braunschweig, Germany
    BMC Evol Biol 4:36. 2004
  5. ncbi request reprint Proteomic characterization of transient expression and secretion of a stress-related metalloprotease in high cell density culture of Bacillus megaterium
    Wei Wang
    TU BCE, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    J Biotechnol 126:313-24. 2006
  6. ncbi request reprint Combined use of proteomic analysis and enzyme activity assays for metabolic pathway analysis of glycerol fermentation by Klebsiella pneumoniae
    Wei Wang
    TU BCE, German Research Centre for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    Biotechnol Bioeng 83:525-36. 2003
  7. ncbi request reprint Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data
    Jibin Sun
    GBF German Research Centre for Biotechnology, Experimental Bioinformatics, Mascheroder Weg 1, D 38124 Braunschweig, Germany
    J Biotechnol 117:147-61. 2005
  8. ncbi request reprint Discovery and investigation of a new, second triose phosphate isomerase in Klebsiella pneumoniae
    Ping Zheng
    GBF German Research Center for Biotechnology, Research Group Systems Biology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    J Biotechnol 125:462-73. 2006
  9. doi request reprint Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions
    Feng Q He
    Helmholtz Centre for Infection Research, D 38124, Braunschweig, Germany
    Integr Biol (Camb) 6:215-23. 2014
  10. pmc The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate
    Xin Lu
    Helmholtz Center for Infection Research, Inhoffenstr, Braunschweig, Germany
    Microb Cell Fact 9:23. 2010

Collaborators

  • An Ping Zeng
  • Wei Wang
  • Ping Zheng
  • Florian Gunzer
  • Dieter Jahn
  • Ursula Rinas
  • Xin Lu
  • Irene Wagner-Döbler
  • Stephen G Oliver
  • P S Dyer
  • Jan Buer
  • Jens Nielsen
  • Etienne G J Danchin
  • Feng Q He
  • Herman J Pel
  • Padhmanand Sudhakar
  • Geoffrey Turner
  • Lubbert Dijkhuizen
  • Han A B Wosten
  • Karoly Pal
  • Peter J Schaap
  • Arthur F J Ram
  • Marga Herweijer
  • Arnold J M Driessen
  • Stefaan Breestraat
  • Christophe d'Enfert
  • Richard Albang
  • Coenie Goosen
  • Mark X Caddick
  • Cees M J Sagt
  • Ronald P de Vries
  • Harrie J Kools
  • Peter J J van de Vondervoort
  • Jacques A E Benen
  • Monika Schmoll
  • Johannes P T W van den Hombergh
  • Michael Cornell
  • Jannick D Bendtsen
  • Frans M Klis
  • Alard van Dijk
  • Piet W J De Groot
  • Noel N M E van Peij
  • Patricia A van Kuyk
  • Gerald Hofmann
  • Wouter Vervecken
  • Jaap Visser
  • Marco van den Berg
  • Steven Geysens
  • Holger Wedler
  • Bernard Henrissat
  • Johannes H de Winde
  • David B Archer
  • Gert S P Groot
  • Piet W M van Dijck
  • Marc J E C van der Maarel
  • Rachel M van der Kaaij
  • Alfons J M Debets
  • Rogier Meulenberg
  • Pedro M Coutinho
  • Roland Contreras
  • Maurien Olsthoorn
  • Peter Dekker
  • Jürgen Lauber
  • Johannes A Roubos
  • Martin A Mortimer
  • David Ussery
  • Rene T J M van der Heijden
  • Cees A M J J van den Hondel
  • Thomas Guillemette
  • Albert J J van Ooyen
  • Mikael R Andersen
  • Christian P Kubicek
  • Hein Stam
  • Janos Varga
  • Hildegard Menke
  • Kaj Albermann

Detail Information

Publications12

  1. pmc IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence
    Jibin Sun
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, Braunschweig, 38124, Germany
    BMC Bioinformatics 5:112. 2004
    ..The annotation process takes time. The available methods often encounter difficulties when dealing with unfinished error-containing genomic sequence...
  2. pmc Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics
    Jibin Sun
    Helmholtz Centre for Infection Research, Inhoffenstr, 38124 Braunschweig, Germany
    Genome Biol 8:R182. 2007
    ..Despite its extensive industrial applications, the genetic inventory of this fungus is only partially understood. The recently released genome sequence opens a new horizon for both scientific studies and biotechnological applications...
  3. ncbi request reprint A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis
    Jibin Sun
    Group Systems Biology, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    J Biotechnol 124:486-95. 2006
    ....
  4. pmc Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways
    Jibin Sun
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Braunschweig, Germany
    BMC Evol Biol 4:36. 2004
    ..Recently, it has been proposed that autoinducer-2 (AI-2), a furanosyl borate diester derived from the recycling of S-adenosyl-homocysteine (SAH) to homocysteine, serves as a universal signal for interspecies communication...
  5. ncbi request reprint Proteomic characterization of transient expression and secretion of a stress-related metalloprotease in high cell density culture of Bacillus megaterium
    Wei Wang
    TU BCE, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    J Biotechnol 126:313-24. 2006
    ..The result raises questions concerning the intrinsic function(s) of Bmg1465 in B. megaterium, which has the GRAS status, with respect to its stress response in high cell density culture...
  6. ncbi request reprint Combined use of proteomic analysis and enzyme activity assays for metabolic pathway analysis of glycerol fermentation by Klebsiella pneumoniae
    Wei Wang
    TU BCE, German Research Centre for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    Biotechnol Bioeng 83:525-36. 2003
    ..In particular, we demonstrated the combined use of proteomic analysis and enzyme activity assay data for metabolic pathway analysis and for a better identification of targets for bioprocess improvement...
  7. ncbi request reprint Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data
    Jibin Sun
    GBF German Research Centre for Biotechnology, Experimental Bioinformatics, Mascheroder Weg 1, D 38124 Braunschweig, Germany
    J Biotechnol 117:147-61. 2005
    ..coli strain Nissle 1917 and is helpful for designing further functional studies long before the sequencing project is completely finished...
  8. ncbi request reprint Discovery and investigation of a new, second triose phosphate isomerase in Klebsiella pneumoniae
    Ping Zheng
    GBF German Research Center for Biotechnology, Research Group Systems Biology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    J Biotechnol 125:462-73. 2006
    ..For the first time, the co-existence of two tpi genes in an enteric bacterium is experimentally confirmed...
  9. doi request reprint Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions
    Feng Q He
    Helmholtz Centre for Infection Research, D 38124, Braunschweig, Germany
    Integr Biol (Camb) 6:215-23. 2014
    ....
  10. pmc The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate
    Xin Lu
    Helmholtz Center for Infection Research, Inhoffenstr, Braunschweig, Germany
    Microb Cell Fact 9:23. 2010
    ..13 growing on defined medium with xylose or maltose as carbon substrate was carried out using 2-D gel electrophoresis/Maldi-ToF and nano-HPLC MS/MS...
  11. ncbi request reprint Comparative genomic analysis of dha regulon and related genes for anaerobic glycerol metabolism in bacteria
    Jibin Sun
    GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    Biotechnol Prog 19:263-72. 2003
    ..pneumoniae in addition to the known ATP-dependent dha kinase. This finding gives new insights into the regulation of glycerol metabolism in K. pneumoniae and explains some hitherto not well understood experimental observations...
  12. ncbi request reprint Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
    Herman J Pel
    DSM Food Specialties, PO Box 1, 2600 MA Delft, The Netherlands
    Nat Biotechnol 25:221-31. 2007
    ..niger. Noteworthy is the large number of major facilitator superfamily transporters and fungal zinc binuclear cluster transcription factors, and the presence of putative gene clusters for fumonisin and ochratoxin A synthesis...