Hong Wu Ma

Summary

Affiliation: German Research Centre for Biotechnology
Country: Germany

Publications

  1. pmc Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    BMC Bioinformatics 5:199. 2004
  2. ncbi request reprint Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology Mascheroder Weg 1, 38124 Braunschweig, Germany
    Bioinformatics 20:1870-6. 2004
  3. pmc An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs
    Hong Wu Ma
    Department of Genome Analysis and Department of Mucosal Immunity, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    Nucleic Acids Res 32:6643-9. 2004
  4. ncbi request reprint Phylogenetic comparison of metabolic capacities of organisms at genome level
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, D 38124 Braunschweig, Germany
    Mol Phylogenet Evol 31:204-13. 2004
  5. ncbi request reprint The connectivity structure, giant strong component and centrality of metabolic networks
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    Bioinformatics 19:1423-30. 2003

Detail Information

Publications5

  1. pmc Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    BMC Bioinformatics 5:199. 2004
    ..Moreover, network motifs such as feed forward loop are recently proposed to be basic building blocks of TRN. However, their relationship to functional modules is not clear...
  2. ncbi request reprint Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology Mascheroder Weg 1, 38124 Braunschweig, Germany
    Bioinformatics 20:1870-6. 2004
    ..Decomposition methods proposed in literature are mainly based on the connection degree of metabolites. To obtain a more reasonable decomposition, the global connectivity structure of metabolic networks should be taken into account...
  3. pmc An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs
    Hong Wu Ma
    Department of Genome Analysis and Department of Mucosal Immunity, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    Nucleic Acids Res 32:6643-9. 2004
    ..Overall, the extended TRN represents a more solid basis for structural and functional analysis of genome-wide gene regulation in E.coli...
  4. ncbi request reprint Phylogenetic comparison of metabolic capacities of organisms at genome level
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, D 38124 Braunschweig, Germany
    Mol Phylogenet Evol 31:204-13. 2004
    ..Further research is needed to identify the organization principle and constraints of metabolic network on HGT which have large impacts on understanding the evolution of life and in purposefully manipulating cellular metabolism...
  5. ncbi request reprint The connectivity structure, giant strong component and centrality of metabolic networks
    Hong Wu Ma
    Department of Genome Analysis, GBF German Research Center for Biotechnology, Mascheroder Weg 1, 38124 Braunschweig, Germany
    Bioinformatics 19:1423-30. 2003
    ..The metabolic network is conventionally considered to be highly integrated and very complex. A rational reduction of the metabolic network to its core structure and a deeper understanding of its functional modules are important...