Sebastian Wernicke

Summary

Affiliation: Friedrich Schiller University
Country: Germany

Publications

  1. ncbi request reprint FANMOD: a tool for fast network motif detection
    Sebastian Wernicke
    Institut fur Informatik, Friedrich Schiller Universität Jena Ernst Abbe Platz 2, 07743 Jena, Germany
    Bioinformatics 22:1152-3. 2006
  2. ncbi request reprint Efficient detection of network motifs
    Sebastian Wernicke
    Institut fur Informatik, Friedrich Shiller Universität Jena, Jena, Germany
    IEEE/ACM Trans Comput Biol Bioinform 3:347-59. 2006
  3. ncbi request reprint Simple and fast alignment of metabolic pathways by exploiting local diversity
    Sebastian Wernicke
    Institut fur Informatik, Friedrich Schiller Universitat Jena, Jena, Germany
    Bioinformatics 23:1978-85. 2007
  4. ncbi request reprint Faspad: fast signaling pathway detection
    Falk Hüffner
    Institut fur Informatik, Friedrich Schiller Universitat Jena, Ernst Abbe Platz 2, D 07743 Jena, Germany
    Bioinformatics 23:1708-9. 2007
  5. doi request reprint Developing fixed-parameter algorithms to solve combinatorially explosive biological problems
    Falk Hüffner
    Institut fur Informatik, Friedrich Schiller Universitat Jena, Jena, Germany
    Methods Mol Biol 453:395-421. 2008

Collaborators

  • Falk Hüffner
  • Rolf Niedermeier
  • Thomas Zichner

Detail Information

Publications5

  1. ncbi request reprint FANMOD: a tool for fast network motif detection
    Sebastian Wernicke
    Institut fur Informatik, Friedrich Schiller Universität Jena Ernst Abbe Platz 2, 07743 Jena, Germany
    Bioinformatics 22:1152-3. 2006
    ..Additional benefits of FANMOD are the ability to analyze colored networks, a graphical user interface and the ability to export results to a variety of machine- and human-readable file formats including comma-separated values and HTML...
  2. ncbi request reprint Efficient detection of network motifs
    Sebastian Wernicke
    Institut fur Informatik, Friedrich Shiller Universität Jena, Jena, Germany
    IEEE/ACM Trans Comput Biol Bioinform 3:347-59. 2006
    ....
  3. ncbi request reprint Simple and fast alignment of metabolic pathways by exploiting local diversity
    Sebastian Wernicke
    Institut fur Informatik, Friedrich Schiller Universitat Jena, Jena, Germany
    Bioinformatics 23:1978-85. 2007
    ..Bioinformatics, 2005] proposed to solve this computationally hard problem by restricting it to the case where both the pattern and host networks are trees. This restriction, however, severely limits the applicability of their algorithm...
  4. ncbi request reprint Faspad: fast signaling pathway detection
    Falk Hüffner
    Institut fur Informatik, Friedrich Schiller Universitat Jena, Ernst Abbe Platz 2, D 07743 Jena, Germany
    Bioinformatics 23:1708-9. 2007
    ..Availability: Faspad is available as free software under the GPL license at http://theinf1.informatik.uni-jena.de/faspad/ and runs under Linux and Windows...
  5. doi request reprint Developing fixed-parameter algorithms to solve combinatorially explosive biological problems
    Falk Hüffner
    Institut fur Informatik, Friedrich Schiller Universitat Jena, Jena, Germany
    Methods Mol Biol 453:395-421. 2008
    ..Each technique is circumstantiated by case studies of applications to biological problems. It also presents other known bioinformatics-related applications and gives pointers to experimental results...