Udo Hahn

Summary

Affiliation: Friedrich Schiller University
Country: Germany

Publications

  1. pmc Active Learning-based corpus annotation--the PathoJen experience
    Udo Hahn
    Jena University Language and Information Engineering JULIE Lab, Friedrich Schiller Universitat Jena, Fürstengraben 30, D 07743 Jena, Germany
    AMIA Annu Symp Proc 2012:301-10. 2012
  2. pmc Mining the pharmacogenomics literature--a survey of the state of the art
    Udo Hahn
    Jena University Language and Information Engineering JULIE Lab, Friedrich Schiller Universitat Jena, Jena, Germany
    Brief Bioinform 13:460-94. 2012
  3. pmc U-Compare bio-event meta-service: compatible BioNLP event extraction services
    Yoshinobu Kano
    Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, 4 1 8 Honcho, Kawaguchi, Saitama, 332 0012, Japan
    BMC Bioinformatics 12:481. 2011
  4. pmc Spatial location and its relevance for terminological inferences in bio-ontologies
    Stefan Schulz
    Medical Informatics Department, Freiburg University Hospital, Freiburg, Germany
    BMC Bioinformatics 8:134. 2007
  5. ncbi request reprint Aligning UniProt and MeSH - a case study on human protein terms
    Elena Beisswanger
    Jena University Language and Information Engineering Lab, Friedrich Schiller Universitat Jena, Jena, Germany
    Stud Health Technol Inform 160:1030-4. 2010
  6. ncbi request reprint Gene Regulation Ontology (GRO): design principles and use cases
    Elena Beisswanger
    Jena University Language and Information Engineering JULIE Lab, Jena, Germany
    Stud Health Technol Inform 136:9-14. 2008
  7. doi request reprint High-performance gene name normalization with GeNo
    Joachim Wermter
    Jena University Language and Information Engineering Lab, Friedrich Schiller Universitat Jena, Fürstengraben 30, 07743 Jena, Germany
    Bioinformatics 25:815-21. 2009
  8. pmc Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets
    Elena Beisswanger
    Jena University Language and Information Engineering JULIE Lab, Friedrich Schiller Universitat Jena, Jena, Germany
    J Biomed Semantics 3:S4. 2012

Collaborators

Detail Information

Publications8

  1. pmc Active Learning-based corpus annotation--the PathoJen experience
    Udo Hahn
    Jena University Language and Information Engineering JULIE Lab, Friedrich Schiller Universitat Jena, Fürstengraben 30, D 07743 Jena, Germany
    AMIA Annu Symp Proc 2012:301-10. 2012
    ....
  2. pmc Mining the pharmacogenomics literature--a survey of the state of the art
    Udo Hahn
    Jena University Language and Information Engineering JULIE Lab, Friedrich Schiller Universitat Jena, Jena, Germany
    Brief Bioinform 13:460-94. 2012
    ..Finally, we consider some of the novel applications that have already been developed in the field of pharmacogenomic text mining and point out perspectives for future research...
  3. pmc U-Compare bio-event meta-service: compatible BioNLP event extraction services
    Yoshinobu Kano
    Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, 4 1 8 Honcho, Kawaguchi, Saitama, 332 0012, Japan
    BMC Bioinformatics 12:481. 2011
    ..While such systems provide useful services individually, there is a need for a meta-service to enable comparison and ensemble of such services, offering optimal solutions for various purposes...
  4. pmc Spatial location and its relevance for terminological inferences in bio-ontologies
    Stefan Schulz
    Medical Informatics Department, Freiburg University Hospital, Freiburg, Germany
    BMC Bioinformatics 8:134. 2007
    ..An adequate and expressive ontological representation of biological organisms and their parts requires formal reasoning mechanisms for their relations of physical aggregation and containment...
  5. ncbi request reprint Aligning UniProt and MeSH - a case study on human protein terms
    Elena Beisswanger
    Jena University Language and Information Engineering Lab, Friedrich Schiller Universitat Jena, Jena, Germany
    Stud Health Technol Inform 160:1030-4. 2010
    ..We achieved 90% precision and 79% recall (applying taxonomy-sensitive metrics). Fortunately, those proteins we were able to map to the MESH are ten times as frequently discussed in the literature as those on which we failed...
  6. ncbi request reprint Gene Regulation Ontology (GRO): design principles and use cases
    Elena Beisswanger
    Jena University Language and Information Engineering JULIE Lab, Jena, Germany
    Stud Health Technol Inform 136:9-14. 2008
    ..The GRO has just been submitted to the OBO library and is currently under review. It is available at http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html...
  7. doi request reprint High-performance gene name normalization with GeNo
    Joachim Wermter
    Jena University Language and Information Engineering Lab, Friedrich Schiller Universitat Jena, Fürstengraben 30, 07743 Jena, Germany
    Bioinformatics 25:815-21. 2009
    ..Their recognition and normalization remains a challenging task because of widespread gene name ambiguities within species, across species, with common English words and with medical sublanguage terms...
  8. pmc Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets
    Elena Beisswanger
    Jena University Language and Information Engineering JULIE Lab, Friedrich Schiller Universitat Jena, Jena, Germany
    J Biomed Semantics 3:S4. 2012
    ....