Olaf Rp Bininda-Emonds

Summary

Affiliation: Friedrich Schiller University
Country: Germany

Publications

  1. pmc A higher-level MRP supertree of placental mammals
    Robin M D Beck
    Division of Biology, Imperial College London, Silwood Park Campus, Ascot SL5 7PY, UK
    BMC Evol Biol 6:93. 2006
  2. pmc Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset
    Jeff W Higdon
    Department of Geography, University of Manitoba, 501 University Crescent, Winnipeg, Manitoba, R3T 2N6, Canada
    BMC Evol Biol 7:216. 2007
  3. pmc Correlates of substitution rate variation in mammalian protein-coding sequences
    John J Welch
    Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, West Mains Rd, Edinburgh EH9 3JT, UK
    BMC Evol Biol 8:53. 2008
  4. ncbi The delayed rise of present-day mammals
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, 85354 Freising Weihenstephan, Germany
    Nature 446:507-12. 2007
  5. pmc Forelimb-hindlimb developmental timing changes across tetrapod phylogeny
    Olaf R P Bininda-Emonds
    Institute of Biology, University of Leiden, Kaiserstraat 63, 2311GP, Leiden, The Netherlands
    BMC Evol Biol 7:182. 2007
  6. doi Phylogenetics, evolution, and medical importance of polyomaviruses
    Andi Krumbholz
    Institute of Virology and Antiviral Therapy, Friedrich Schiller University Jena, Hans Knoell Strasse 2, 07745 Jena, Germany
    Infect Genet Evol 9:784-99. 2009
  7. pmc Inverting the hourglass: quantitative evidence against the phylotypic stage in vertebrate development
    Olaf R P Bininda-Emonds
    Institute of Evolutionary and Ecological Sciences, Leiden University, Kaiserstraat 63, PO Box 9516, The Netherlands
    Proc Biol Sci 270:341-6. 2003
  8. ncbi Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising Weihenstephan, Germany
    Syst Biol 52:839-48. 2003
  9. pmc transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Hochfeldweg 1, 85354 Freising Weihenstephan, Germany
    BMC Bioinformatics 6:156. 2005
  10. ncbi Supertrees are a necessary not-so-evil: a comment on Gatesy et al
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising Weihenstephan, Germany
    Syst Biol 52:724-9. 2003

Detail Information

Publications25

  1. pmc A higher-level MRP supertree of placental mammals
    Robin M D Beck
    Division of Biology, Imperial College London, Silwood Park Campus, Ascot SL5 7PY, UK
    BMC Evol Biol 6:93. 2006
    ....
  2. pmc Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset
    Jeff W Higdon
    Department of Geography, University of Manitoba, 501 University Crescent, Winnipeg, Manitoba, R3T 2N6, Canada
    BMC Evol Biol 7:216. 2007
    ..Divergence dates were also calculated using a Bayesian relaxed molecular clock with rate autocorrelation to test the sensitivity of our supertree results further...
  3. pmc Correlates of substitution rate variation in mammalian protein-coding sequences
    John J Welch
    Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, West Mains Rd, Edinburgh EH9 3JT, UK
    BMC Evol Biol 8:53. 2008
    ..Particular attention is paid to the widespread correlations between the components of mammalian life history, which can complicate the interpretation of results...
  4. ncbi The delayed rise of present-day mammals
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, 85354 Freising Weihenstephan, Germany
    Nature 446:507-12. 2007
    ....
  5. pmc Forelimb-hindlimb developmental timing changes across tetrapod phylogeny
    Olaf R P Bininda-Emonds
    Institute of Biology, University of Leiden, Kaiserstraat 63, 2311GP, Leiden, The Netherlands
    BMC Evol Biol 7:182. 2007
    ....
  6. doi Phylogenetics, evolution, and medical importance of polyomaviruses
    Andi Krumbholz
    Institute of Virology and Antiviral Therapy, Friedrich Schiller University Jena, Hans Knoell Strasse 2, 07745 Jena, Germany
    Infect Genet Evol 9:784-99. 2009
    ..Finally, we reveal that the hypothesis of a strict codivergence of polyomaviruses with their respective hosts does not represent a realistic assumption in light of phylogenetic findings presented here...
  7. pmc Inverting the hourglass: quantitative evidence against the phylotypic stage in vertebrate development
    Olaf R P Bininda-Emonds
    Institute of Evolutionary and Ecological Sciences, Leiden University, Kaiserstraat 63, PO Box 9516, The Netherlands
    Proc Biol Sci 270:341-6. 2003
    ..The onus is now clearly on proponents of the phylotypic stage to present both a clear definition of it and quantitative data supporting its existence...
  8. ncbi Novel versus unsupported clades: assessing the qualitative support for clades in MRP supertrees
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising Weihenstephan, Germany
    Syst Biol 52:839-48. 2003
    ..More importantly, they sample at the level of the source trees and thus, unlike the bootstrap, are suitable for summarizing the support of MRP supertree clades...
  9. pmc transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Hochfeldweg 1, 85354 Freising Weihenstephan, Germany
    BMC Bioinformatics 6:156. 2005
    ..As such, they are not well suited to large-scale automated alignments of large and/or numerous DNA data sets...
  10. ncbi Supertrees are a necessary not-so-evil: a comment on Gatesy et al
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising Weihenstephan, Germany
    Syst Biol 52:724-9. 2003
  11. ncbi Supertree construction in the genomic age
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, 85354 Freising Weihenstephan, Germany
    Methods Enzymol 395:745-57. 2005
    ....
  12. ncbi A new technique for identifying sequence heterochrony
    Jonathan E Jeffery
    Institute of Biology, Leiden University, Kaiserstraat 63, Leiden, 2311GP, The Netherlands
    Syst Biol 54:230-40. 2005
    ..This new technique, which we call Parsimov, greatly increases the utility of the event-pair method for inferring instances of sequence heterochrony...
  13. ncbi Getting to the roots of matrix representation
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Hochfeldweg 1, 85354 Freising Weihenstephan, Germany
    Syst Biol 54:668-72. 2005
  14. ncbi Trees versus characters and the supertree/supermatrix "paradox"
    Olaf R P Bininda-Emonds
    Lehrstuhl für Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising Weihenstephan, Germany
    Syst Biol 53:356-9. 2004
  15. pmc Colloquium paper: phylogenetic trees and the future of mammalian biodiversity
    T Jonathan Davies
    National Center for Ecological Analysis and Synthesis, University of California, 735 State Street, Santa Barbara, CA 93101, USA
    Proc Natl Acad Sci U S A 105:11556-63. 2008
    ....
  16. ncbi Flight of the dodo
    Beth Shapiro
    Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK
    Science 295:1683. 2002
  17. ncbi Analyzing developmental sequences within a phylogenetic framework
    Jonathan E Jeffery
    Department of Anatomy and Developmental Biology, St George s Hospital Medical School, Tooting, London SW17 ORE, UK
    Syst Biol 51:478-91. 2002
    ..We demonstrate the utility of event-pair cracking through a worked example and show how it provides a set of desired features identified by previous authors...
  18. ncbi Analyzing evolutionary patterns in amniote embryonic development
    Jonathan E Jeffery
    Department of Anatomy and Developmental Biology, St George s Hospital Medical School, London, UK
    Evol Dev 4:292-302. 2002
    ..Our approach can be adapted to analyze other forms of comparative dynamic data, including patterns of developmental gene expression...
  19. ncbi A complete phylogeny of the whales, dolphins and even-toed hoofed mammals (Cetartiodactyla)
    Samantha A Price
    Department of Biology, Gilmer Hall, University of Virginia, Charlottesville, VA 22904 4328, USA
    Biol Rev Camb Philos Soc 80:445-73. 2005
    ..The present species-level tree of the Cetartiodactyla provides the first opportunity to examine comparative hypotheses across entirely aquatic and terrestrial species within a single mammalian order...
  20. ncbi When genes meet nomenclature: tortoise phylogeny and the shifting generic concepts of Testudo and Geochelone
    Uwe Fritz
    Museum of Zoology, Natural History State Collections Dresden, A B Meyer Building, D 01109 Dresden, Germany
    Zoology (Jena) 110:298-307. 2007
    ..pardalis is sister to a monophyletic Psammobates. In light of the clear morphological gap between G. pardalis and Psammobates species, the recognition of a distinct genus Stigmochelys for the former seems justified...
  21. ncbi Multiple causes of high extinction risk in large mammal species
    Marcel Cardillo
    Division of Biology, Imperial College London, Silwood Park, Ascot SL5 7PY, UK
    Science 309:1239-41. 2005
    ..Thus, the disadvantages of large size are greater than generally recognized, and future loss of large mammal biodiversity could be far more rapid than expected...
  22. ncbi An integrative approach identifies developmental sequence heterochronies in freshwater basommatophoran snails
    Jennifer J Smirthwaite
    Marine Biology and Ecology Research Centre, University of Plymouth, Drakes Circus, Plymouth PL4 8AA, UK
    Evol Dev 9:122-30. 2007
    ..Such a functional approach to the study of developmental sequences has highlighted the possibility that heterochrony may have played a prominent role in the evolution of this group of invertebrates...
  23. doi Evolution of four BK virus subtypes
    Andi Krumbholz
    Institute of Virology and Antiviral Therapy, Friedrich Schiller University Jena, Hans Knoell Strasse 2, D 07745 Jena, Germany
    Infect Genet Evol 8:632-43. 2008
    ..Another approach, external calibration by linking BKV divergence to the evolution of mammals, was rejected as it advances BKV divergence prior to the emergence of modern humans...
  24. ncbi A phylogenetic supertree of the bats (Mammalia: Chiroptera)
    Kate E Jones
    Department of Biology, Imperial College at Silwood Park, Ascot, Berkshire, UK
    Biol Rev Camb Philos Soc 77:223-59. 2002
    ....
  25. ncbi Bats, clocks, and rocks: diversification patterns in Chiroptera
    Kate E Jones
    Department of Biology, Gilmer Hall, University of Virginia, Charlottesville, Virginia 22904 4328, USA
    Evolution 59:2243-55. 2005
    ..Diversification rate in bats has also not been constant, with the largest diversification rate shifts occurring 30-50 million years ago, a time overlapping with the greatest number of shifts in flowering plant diversification rates...