Birgitte Regenberg

Summary

Affiliation: Frankfurt am Main
Country: Germany

Publications

  1. pmc Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae
    Birgitte Regenberg
    Institut für Molekulare Biowissenschaften, Johann Wolfgang Goethe Universitat, Max von Laue Str, 9, 60438 Frankfurt am Main, Germany
    Genome Biol 7:R107. 2006
  2. ncbi request reprint Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae
    Matthew D W Piper
    Kluyver Laboratory of Biotechnology, Technical University of Delft, Julianalaan 26, Delft 2628BC, The Netherlands
    J Biol Chem 277:37001-8. 2002
  3. pmc Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation
    Renata Usaite
    Center for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, Building 223, DK 2800 Kgs Lyngby, Denmark
    Appl Environ Microbiol 72:6194-203. 2006
  4. pmc Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: example of transcript analysis as a tool in inverse metabolic engineering
    Christoffer Bro
    Center for Microbial Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Appl Environ Microbiol 71:6465-72. 2005
  5. ncbi request reprint Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
    Thomas Grotkjaer
    Center for Microbial Biotechnology BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Bioinformatics 22:58-67. 2006
  6. ncbi request reprint Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae
    Nadine Eckert-Boulet
    Center for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, Building 223, BioCentrum DTU, 2800 Lyngby, Denmark
    Curr Genet 47:139-49. 2005
  7. ncbi request reprint Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp1p and Stp2p
    Nadine Eckert-Boulet
    Centre for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Yeast 21:635-48. 2004
  8. ncbi request reprint Genome-wide transcriptional response of a Saccharomyces cerevisiae strain with an altered redox metabolism
    Christoffer Bro
    Center for Process Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Biotechnol Bioeng 85:269-76. 2004
  9. ncbi request reprint Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells
    Christoffer Bro
    Center for Process Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    J Biol Chem 278:32141-9. 2003
  10. ncbi request reprint In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production
    Christoffer Bro
    Center for Microbial Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs, Lyngby, Denmark
    Metab Eng 8:102-11. 2006

Collaborators

  • Mats Akesson
  • Jens Nielsen
  • Thomas Grotkjaer
  • L Olsson
  • S Knudsen
  • Christoffer Bro
  • Nadine Eckert-Boulet
  • Willem A de Jongh
  • Renata Usaite
  • Morten C Kielland-Brandt
  • Matthew D W Piper
  • Simon Ostergaard
  • Kiran R Patil
  • Peter Poulsen
  • Boqian Wu
  • Jochen Forster
  • Katrin Larsson
  • Carsten Friis
  • Margarida Moreira dos Santos
  • Peter Stein Nielsen
  • Gilles Lagniel
  • Jean Labarre
  • Monica Montero-Lomeli
  • Pascale Daran-Lapujade
  • Jack T Pronk

Detail Information

Publications12

  1. pmc Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae
    Birgitte Regenberg
    Institut für Molekulare Biowissenschaften, Johann Wolfgang Goethe Universitat, Max von Laue Str, 9, 60438 Frankfurt am Main, Germany
    Genome Biol 7:R107. 2006
    ..We used continuous cultures to control growth rate and studied the transcriptional program of the model eukaryote Saccharomyces cerevisiae, with generation times varying between 2 and 35 hours...
  2. ncbi request reprint Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae
    Matthew D W Piper
    Kluyver Laboratory of Biotechnology, Technical University of Delft, Julianalaan 26, Delft 2628BC, The Netherlands
    J Biol Chem 277:37001-8. 2002
    ....
  3. pmc Global transcriptional and physiological responses of Saccharomyces cerevisiae to ammonium, L-alanine, or L-glutamine limitation
    Renata Usaite
    Center for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, Building 223, DK 2800 Kgs Lyngby, Denmark
    Appl Environ Microbiol 72:6194-203. 2006
    ..In conclusion, our results reveal that the nitrogen source has substantial influence on the transcriptome of yeasts and that transcriptional changes may be correlated to physiology via a metabolic model...
  4. pmc Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: example of transcript analysis as a tool in inverse metabolic engineering
    Christoffer Bro
    Center for Microbial Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Appl Environ Microbiol 71:6465-72. 2005
    ..This conclusion was supported by measurements of sugar phosphates, which showed that there were increased concentrations of glucose-6-phosphate, galactose-6-phosphate, and fructose-6-phosphate in the strain construct overexpressing PGM2...
  5. ncbi request reprint Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
    Thomas Grotkjaer
    Center for Microbial Biotechnology BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Bioinformatics 22:58-67. 2006
    ..The algorithm preserves valuable properties of hierarchical clustering, which is useful for visualization and interpretation of the results...
  6. ncbi request reprint Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae
    Nadine Eckert-Boulet
    Center for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, Building 223, BioCentrum DTU, 2800 Lyngby, Denmark
    Curr Genet 47:139-49. 2005
    ....
  7. ncbi request reprint Transcriptional profiling of extracellular amino acid sensing in Saccharomyces cerevisiae and the role of Stp1p and Stp2p
    Nadine Eckert-Boulet
    Centre for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Yeast 21:635-48. 2004
    ..Also, most of the structural genes involved in trehalose and glycogen synthesis and a few genes in the glyoxylate cycle and the pentose phosphate pathway are derepressed in the ssy1 and stp1 stp2 strains...
  8. ncbi request reprint Genome-wide transcriptional response of a Saccharomyces cerevisiae strain with an altered redox metabolism
    Christoffer Bro
    Center for Process Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Biotechnol Bioeng 85:269-76. 2004
    ..Furthermore, we showed that it might be necessary to analyze the expression of a subset of genes to extract all available information from global transcription analysis...
  9. ncbi request reprint Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells
    Christoffer Bro
    Center for Process Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    J Biol Chem 278:32141-9. 2003
    ....
  10. ncbi request reprint In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production
    Christoffer Bro
    Center for Microbial Biotechnology, BioCentrum DTU, Building 223, Technical University of Denmark, DK 2800 Kgs, Lyngby, Denmark
    Metab Eng 8:102-11. 2006
    ..Similarly, expression of GAPN in a strain harbouring xylose reductase and xylitol dehydrogenase led to an improvement in ethanol yield by up to 25% on xylose/glucose mixtures...
  11. pmc Deletion of RTS1, encoding a regulatory subunit of protein phosphatase 2A, results in constitutive amino acid signaling via increased Stp1p processing
    Nadine Eckert-Boulet
    Carlsberg Laboratory, Gamle Carlsberg Vej 10, DK 2500 Copenhagen Valby, Denmark
    Eukaryot Cell 5:174-9. 2006
    ..Based on our findings we propose that the phosphatase complex containing Rts1p keeps the SPS-mediated pathway down-regulated in the absence of extracellular amino acids by dephosphorylating a component of the pathway...
  12. doi request reprint The roles of galactitol, galactose-1-phosphate, and phosphoglucomutase in galactose-induced toxicity in Saccharomyces cerevisiae
    Willem A de Jongh
    Center for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, Building 223, Søltofts Plads, DK 2800 Kgs Lyngby, Denmark
    Biotechnol Bioeng 101:317-26. 2008
    ....