Ferenc Muller

Summary

Affiliation: Forschungszentrum Karlsruhe
Country: Germany

Publications

  1. pmc Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction
    Yavor Hadzhiev
    Laboratory of Developmental Transcription Regulation, Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Karlsruhe D 76021, Germany
    Genome Biol 8:R106. 2007
  2. pmc Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage
    Remo Sanges
    Telethon Institute of Genetics and Medicine, Via P, Castellino, 80131 Napoli, Italy
    Genome Biol 7:R56. 2006
  3. ncbi request reprint Search for enhancers: teleost models in comparative genomic and transgenic analysis of cis regulatory elements
    Ferenc Muller
    Institute of Toxicology and Genetics, Research Center Karlsruhe, Germany
    Bioessays 24:564-72. 2002
  4. ncbi request reprint New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors
    Ferenc Muller
    Institute of Toxicology and Genetics, Forschungszentrum, Karlsruhe, D 76021 Germany
    J Biol Chem 282:14685-9. 2007
  5. doi request reprint Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos
    Jochen Gehrig
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Eggenstein Leopoldshafen, Germany
    Nat Methods 6:911-6. 2009
  6. doi request reprint Automated feature detection and imaging for high-resolution screening of zebrafish embryos
    Ravindra Peravali
    Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, Eggenstein Leopoldshafen, Germany
    Biotechniques 50:319-24. 2011
  7. pmc The multicoloured world of promoter recognition complexes
    Ferenc Muller
    Institute of Toxicology and Genetics, Forschungszentrum, Karlsruhe, Germany
    EMBO J 23:2-8. 2004
  8. pmc Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo
    Lixin Yang
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Postfach 3640, 76021 Karlsruhe, Germany
    Genome Biol 8:R227. 2007
  9. ncbi request reprint Zebrafish embryos as models for embryotoxic and teratological effects of chemicals
    Lixin Yang
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe in the Helmholtz Association, Karlsruhe Institute of Technology, PO Box 3640, Karlsruhe 76021, Germany
    Reprod Toxicol 28:245-53. 2009
  10. pmc The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish
    Marco Ferg
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Eggenstein Leopoldshafen, Germany
    EMBO J 26:3945-56. 2007

Collaborators

Detail Information

Publications11

  1. pmc Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction
    Yavor Hadzhiev
    Laboratory of Developmental Transcription Regulation, Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Karlsruhe D 76021, Germany
    Genome Biol 8:R106. 2007
    ..We investigated the ar-C midline enhancer of sonic hedgehog (shh) orthologs and paralogs from distantly related vertebrate lineages, from fish to human, including the basal vertebrate Latimeria menadoensis...
  2. pmc Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage
    Remo Sanges
    Telethon Institute of Genetics and Medicine, Via P, Castellino, 80131 Napoli, Italy
    Genome Biol 7:R56. 2006
    ....
  3. ncbi request reprint Search for enhancers: teleost models in comparative genomic and transgenic analysis of cis regulatory elements
    Ferenc Muller
    Institute of Toxicology and Genetics, Research Center Karlsruhe, Germany
    Bioessays 24:564-72. 2002
    ..Here we discuss the contribution and potentials provided by different teleost models for the detection and functional analysis of conserved cis-regulatory elements...
  4. ncbi request reprint New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors
    Ferenc Muller
    Institute of Toxicology and Genetics, Forschungszentrum, Karlsruhe, D 76021 Germany
    J Biol Chem 282:14685-9. 2007
  5. doi request reprint Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos
    Jochen Gehrig
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Eggenstein Leopoldshafen, Germany
    Nat Methods 6:911-6. 2009
    ..The technology described here is also suitable for the spatial analysis of fluorescence readouts in genetic, pharmaceutical or toxicological screens...
  6. doi request reprint Automated feature detection and imaging for high-resolution screening of zebrafish embryos
    Ravindra Peravali
    Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, Eggenstein Leopoldshafen, Germany
    Biotechniques 50:319-24. 2011
    ..The toolset is flexible and can be readily applied for the imaging of different specimens in various applications...
  7. pmc The multicoloured world of promoter recognition complexes
    Ferenc Muller
    Institute of Toxicology and Genetics, Forschungszentrum, Karlsruhe, Germany
    EMBO J 23:2-8. 2004
    ....
  8. pmc Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo
    Lixin Yang
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Postfach 3640, 76021 Karlsruhe, Germany
    Genome Biol 8:R227. 2007
    ..We addressed the toxicogenomic response of the zebrafish embryo in a systematic manner by asking whether distinct chemicals would induce specific transcriptional profiles...
  9. ncbi request reprint Zebrafish embryos as models for embryotoxic and teratological effects of chemicals
    Lixin Yang
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe in the Helmholtz Association, Karlsruhe Institute of Technology, PO Box 3640, Karlsruhe 76021, Germany
    Reprod Toxicol 28:245-53. 2009
    ....
  10. pmc The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish
    Marco Ferg
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Eggenstein Leopoldshafen, Germany
    EMBO J 26:3945-56. 2007
    ..These results implicate core promoter recognition as an additional level of differential gene regulation during development...
  11. pmc Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafish
    Yavor Hadzhiev
    Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Karlsruhe, Germany
    BMC Dev Biol 7:75. 2007
    ..However, the extent to which the molecular mechanisms patterning paired and median fins are shared remains unknown...