Parantu K Shah

Summary

Affiliation: European Molecular Biology Laboratory
Country: Germany

Publications

  1. ncbi Information extraction from full text scientific articles: where are the keywords?
    Parantu K Shah
    Biocomputing, European Molecular Biology Laboratory, Heidelberg, Germany
    BMC Bioinformatics 4:20. 2003
  2. ncbi LSAT: learning about alternative transcripts in MEDLINE
    Parantu K Shah
    European Molecular Biology Laboratory, Heidelberg, Germany
    Bioinformatics 22:857-65. 2006
  3. ncbi Computational characterization of multiple Gag-like human proteins
    Monica Campillos
    EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Trends Genet 22:585-9. 2006
  4. ncbi Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families
    Parantu K Shah
    European Molecular Biology Laboratory, Meyerhofstrasse 1, Heidelberg, Germany
    Gene 407:199-215. 2008
  5. ncbi PASBio: predicate-argument structures for event extraction in molecular biology
    Tuangthong Wattarujeekrit
    National Institute of Informatics, National Center of Sciences, Hitotsubashi 2 1 2, Chiyoda ku, Tokyo 101 8430, Japan
    BMC Bioinformatics 5:155. 2004
  6. ncbi Evolutionary analysis of enzymes using Chisel
    Alexis A Rodriguez
    Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S Cass Ave, Argonne, IL 60439, USA
    Bioinformatics 23:2961-8. 2007

Collaborators

Detail Information

Publications6

  1. ncbi Information extraction from full text scientific articles: where are the keywords?
    Parantu K Shah
    Biocomputing, European Molecular Biology Laboratory, Heidelberg, Germany
    BMC Bioinformatics 4:20. 2003
    ..Several questions arise as to whether the effort of scanning full text articles is worthy, or whether the information that can be extracted from the different sections of an article can be relevant...
  2. ncbi LSAT: learning about alternative transcripts in MEDLINE
    Parantu K Shah
    European Molecular Biology Laboratory, Heidelberg, Germany
    Bioinformatics 22:857-65. 2006
    ..In this work, we choose the task of extracting information around this complex topic using a two-step procedure involving machine learning and information extraction...
  3. ncbi Computational characterization of multiple Gag-like human proteins
    Monica Campillos
    EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Trends Genet 22:585-9. 2006
    ....
  4. ncbi Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families
    Parantu K Shah
    European Molecular Biology Laboratory, Meyerhofstrasse 1, Heidelberg, Germany
    Gene 407:199-215. 2008
    ..Utilization of such multi-fold approaches results in 10-fold increase of function annotation for Drosophila serine proteases and demonstrates value in increasing annotations in multiple genomes...
  5. ncbi PASBio: predicate-argument structures for event extraction in molecular biology
    Tuangthong Wattarujeekrit
    National Institute of Informatics, National Center of Sciences, Hitotsubashi 2 1 2, Chiyoda ku, Tokyo 101 8430, Japan
    BMC Bioinformatics 5:155. 2004
    ..In this article, we explore the need to adapt PAS for the MB domain and specify PAS frames to support IE, as well as outlining the major issues that require consideration in their construction...
  6. ncbi Evolutionary analysis of enzymes using Chisel
    Alexis A Rodriguez
    Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S Cass Ave, Argonne, IL 60439, USA
    Bioinformatics 23:2961-8. 2007
    ..We also provide a thorough analysis of Chisel performance with other similar resources and manual annotations on Shewanella oneidensis MR1 genome...