Research Topics

C Ramu

Affiliation: European Molecular Biology Laboratory

Country: Germany

Object-oriented parsing of biological databases with Python
C Ramu
European Molecular Biological Laboratory, Meyerhofstrasse 1, Postfach 10 2209, Heidelberg, Germany
Bioinformatics 16:628-38. 2000
SIR: a simple indexing and retrieval system for biological flat file databases
C Ramu
European Molecular Biological Laboratory, 1, Meyerhofstrasse, Postfach 10 2209, Heidelberg, Germany
Bioinformatics 17:756-8. 2001
Gene2EST: a BLAST2 server for searching expressed sequence tag (EST) databases with eukaryotic gene-sized queries
C Gemund
European Molecular Biology Laboratory, Postfach 10 2209, 69012 Heidelberg, Germany
Nucleic Acids Res 29:1272-7. 2001

Object-oriented parsing of biological databases with Python
C Ramu
European Molecular Biological Laboratory, Meyerhofstrasse 1, Postfach 10 2209, Heidelberg, Germany
Bioinformatics 16:628-38. 2000
..The interface to the parser is abstract in the sense that the access to all the databases is independent from their different formats, since parsing instructions are hidden...
SIR: a simple indexing and retrieval system for biological flat file databases
C Ramu
European Molecular Biological Laboratory, 1, Meyerhofstrasse, Postfach 10 2209, Heidelberg, Germany
Bioinformatics 17:756-8. 2001
..AVAILABILITY: The modules will be made available at http://www.EMBLHeidelberg.de/~chenna/PySAT/sir.html..
Gene2EST: a BLAST2 server for searching expressed sequence tag (EST) databases with eukaryotic gene-sized queries
C Gemund
European Molecular Biology Laboratory, Postfach 10 2209, 69012 Heidelberg, Germany
Nucleic Acids Res 29:1272-7. 2001
..Gene2EST combines these components into a Web resource targeted at the researcher who wishes to study one or a few genes to a high level of detail...