Jean Muller

Summary

Affiliation: European Molecular Biology Laboratory
Country: Germany

Publications

  1. doi request reprint AQUA: automated quality improvement for multiple sequence alignments
    Jean Muller
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany
    Bioinformatics 26:263-5. 2010
  2. pmc eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
    Sean Powell
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nucleic Acids Res 40:D284-9. 2012
  3. pmc Orthology prediction methods: a quality assessment using curated protein families
    Kalliopi Trachana
    Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
    Bioessays 33:769-80. 2011
  4. pmc STRING 8--a global view on proteins and their functional interactions in 630 organisms
    Lars J Jensen
    European Molecular Biology Laboratory, Heidelberg, Germany
    Nucleic Acids Res 37:D412-6. 2009
  5. pmc Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton
    Jean Muller
    Laboratoire de Biologie Moleculaire, d Analyse Génique et de Modélisation, Centre de Recherche Public Santé, 84 rue Val Fleuri, L 1526 Luxembourg, Luxembourg
    BMC Genomics 8:294. 2007
  6. pmc A nitrile hydratase in the eukaryote Monosiga brevicollis
    Konrad U Foerstner
    European Molecular Biology Laboratory, Heidelberg, Germany
    PLoS ONE 3:e3976. 2008
  7. pmc eggNOG: automated construction and annotation of orthologous groups of genes
    Lars Juhl Jensen
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nucleic Acids Res 36:D250-4. 2008
  8. pmc Enterotypes of the human gut microbiome
    Manimozhiyan Arumugam
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nature 473:174-80. 2011

Collaborators

Detail Information

Publications8

  1. doi request reprint AQUA: automated quality improvement for multiple sequence alignments
    Jean Muller
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany
    Bioinformatics 26:263-5. 2010
    ..Availability: AQUA is implemented in Tcl/Tk and runs in command line on all platforms. The source code is available under the GNU GPL license. Source code, README and Supplementary data are available at http://www.bork.embl.de/Docu/AQUA...
  2. pmc eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
    Sean Powell
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nucleic Acids Res 40:D284-9. 2012
    ..Each group is amended by multiple sequence alignments and maximum-likelihood trees and broad functional descriptions are provided for 450,904 orthologous groups (62.5%)...
  3. pmc Orthology prediction methods: a quality assessment using curated protein families
    Kalliopi Trachana
    Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
    Bioessays 33:769-80. 2011
    ..embl.de/orthobench/) should facilitate the improvement of current orthology assignment protocols, which is of utmost importance for many fields of biology and should be tackled by a broad scientific community...
  4. pmc STRING 8--a global view on proteins and their functional interactions in 630 organisms
    Lars J Jensen
    European Molecular Biology Laboratory, Heidelberg, Germany
    Nucleic Acids Res 37:D412-6. 2009
    ..Version 8.0 of STRING covers about 2.5 million proteins from 630 organisms, providing the most comprehensive view on protein-protein interactions currently available. STRING can be reached at http://string-db.org/...
  5. pmc Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton
    Jean Muller
    Laboratoire de Biologie Moleculaire, d Analyse Génique et de Modélisation, Centre de Recherche Public Santé, 84 rue Val Fleuri, L 1526 Luxembourg, Luxembourg
    BMC Genomics 8:294. 2007
    ..Here we report the development of a dedicated microarray, the Actichip, containing 60-mer oligonucleotide probes for 327 genes selected for transcriptome analysis of the human actin cytoskeleton...
  6. pmc A nitrile hydratase in the eukaryote Monosiga brevicollis
    Konrad U Foerstner
    European Molecular Biology Laboratory, Heidelberg, Germany
    PLoS ONE 3:e3976. 2008
    ..The newly discovered NHase might open biotechnological routes due to its unconventional structure, its new type of host and its apparent integration into eukaryotic protein networks...
  7. pmc eggNOG: automated construction and annotation of orthologous groups of genes
    Lars Juhl Jensen
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nucleic Acids Res 36:D250-4. 2008
    ..Users can query the resource for individual genes via a web interface or download the complete set of orthologous groups at http://eggnog.embl.de...
  8. pmc Enterotypes of the human gut microbiome
    Manimozhiyan Arumugam
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nature 473:174-80. 2011
    ..For example, twelve genes significantly correlate with age and three functional modules with the body mass index, hinting at a diagnostic potential of microbial markers...