Sean D Hooper

Summary

Affiliation: European Molecular Biology Laboratory
Country: Germany

Publications

  1. ncbi request reprint Medusa: a simple tool for interaction graph analysis
    Sean D Hooper
    European Molecular Biology Laboratory Heidelberg, Germany
    Bioinformatics 21:4432-3. 2005
  2. pmc OnTheFly: a tool for automated document-based text annotation, data linking and network generation
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg
    Bioinformatics 25:977-8. 2009
  3. pmc jClust: a clustering and visualization toolbox
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg, Germany
    Bioinformatics 25:1994-6. 2009
  4. pmc STRING: known and predicted protein-protein associations, integrated and transferred across organisms
    Christian von Mering
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nucleic Acids Res 33:D433-7. 2005
  5. pmc Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
    Sean D Hooper
    Structural and Computational Biology Unit, EMBL, Heidelberg, Germany
    Mol Syst Biol 3:72. 2007

Collaborators

Detail Information

Publications5

  1. ncbi request reprint Medusa: a simple tool for interaction graph analysis
    Sean D Hooper
    European Molecular Biology Laboratory Heidelberg, Germany
    Bioinformatics 21:4432-3. 2005
    ..It features an intuitive user interface developed with the help of biologists. Medusa is optimized for accessing protein interaction data from STRING, but can be used for any type of graph from any scientific field...
  2. pmc OnTheFly: a tool for automated document-based text annotation, data linking and network generation
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg
    Bioinformatics 25:977-8. 2009
    ....
  3. pmc jClust: a clustering and visualization toolbox
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg, Germany
    Bioinformatics 25:1994-6. 2009
    ..The combination of a simple input file format, a set of clustering and filtering algorithms linked together with the visualization tool provides a powerful tool for data analysis and information extraction...
  4. pmc STRING: known and predicted protein-protein associations, integrated and transferred across organisms
    Christian von Mering
    European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Nucleic Acids Res 33:D433-7. 2005
    ..STRING currently holds 730,000 proteins in 180 fully sequenced organisms, and is available at http://string.embl.de/...
  5. pmc Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
    Sean D Hooper
    Structural and Computational Biology Unit, EMBL, Heidelberg, Germany
    Mol Syst Biol 3:72. 2007
    ..By mapping the groups to the protein network, we also predict and experimentally confirm new functional associations...