Daniel Castaño Diez

Summary

Affiliation: European Molecular Biology Laboratory
Country: Germany

Publications

  1. ncbi Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis
    Daniel Castaño Díez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 154:195-205. 2006
  2. ncbi Robust regression of scattered data with adaptive spline-wavelets
    Daniel Castaño
    European Molecular Biology Laboratory, Heidelberg, Germany
    IEEE Trans Image Process 15:1621-32. 2006
  3. ncbi Implementation and performance evaluation of reconstruction algorithms on graphics processors
    Daniel Castaño Diez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 157:288-95. 2007
  4. ncbi Fiducial-less alignment of cryo-sections
    Daniel Castaño-Diez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 159:413-23. 2007
  5. ncbi Reprint of "Fiducial-less alignment of cryo-sections" [J. Struct. Biol. 159 (2007) 413-423]
    Daniel Castaño-Diez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 161:249-59. 2008
  6. ncbi Performance evaluation of image processing algorithms on the GPU
    Daniel Castaño-Diez
    Computational and Structural Biology, European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 164:153-60. 2008
  7. ncbi Building the stator of the yeast vacuolar-ATPase: specific interaction between subunits E and G
    James Féthière
    Structural and Computational Biology Programme, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    J Biol Chem 279:40670-6. 2004
  8. ncbi Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography
    Anja Seybert
    European Molecular Biology Laboratory (EMBL, Meyerhofstr. 1, 69117 Heidelberg, Germany
    J Struct Biol 156:342-54. 2006

Collaborators

  • Achilleas S Frangakis
  • Ashraf Al-Amoudi
  • Sabine Pruggnaller
  • Daniel Castaño-Diez
  • Anja Seybert
  • Anne Marie Glynn
  • Anne-Marie Glynn
  • Daniel Castaño
  • Daniel Castaño Díez
  • James Féthière
  • Dominik Moser
  • Andreas Schoenegger
  • Richard Herrmann
  • Angela Kunoth
  • Marc Gentzel
  • Bettina Bottcher
  • Arie Geerlof
  • David Venzke
  • Meikel Diepholz
  • Matthias Wilm

Detail Information

Publications8

  1. ncbi Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis
    Daniel Castaño Díez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 154:195-205. 2006
    ..Finally, we also present a way to align the hardware of the microscope to correct for the non-perpendicularity between the beam direction and the tilt-axis, which is specifically tailored for tomographic applications...
  2. ncbi Robust regression of scattered data with adaptive spline-wavelets
    Daniel Castaño
    European Molecular Biology Laboratory, Heidelberg, Germany
    IEEE Trans Image Process 15:1621-32. 2006
    ..In this paper, we develop within this least-squares approach some statistical robust estimators to handle outliers in the data. Our wavelet scheme yields a numerically fast and reliable way to detect outliers...
  3. ncbi Implementation and performance evaluation of reconstruction algorithms on graphics processors
    Daniel Castaño Diez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 157:288-95. 2007
    ..The reconstruction software does not require special hardware apart from the commercially available graphics cards and could be easily integrated in software packages like SPIDER, XMIPP, TOM-Package and others...
  4. ncbi Fiducial-less alignment of cryo-sections
    Daniel Castaño-Diez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 159:413-23. 2007
    ..An additional advantage of the algorithm is the implicit detection of areas in the sections that behave as rigid bodies and can thus be properly reconstructed...
  5. ncbi Reprint of "Fiducial-less alignment of cryo-sections" [J. Struct. Biol. 159 (2007) 413-423]
    Daniel Castaño-Diez
    European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 161:249-59. 2008
    ..An additional advantage of the algorithm is the implicit detection of areas in the sections that behave as rigid bodies and can thus be properly reconstructed...
  6. ncbi Performance evaluation of image processing algorithms on the GPU
    Daniel Castaño-Diez
    Computational and Structural Biology, European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
    J Struct Biol 164:153-60. 2008
    ..The gained speed-up comes with no additional costs, since the software runs on the GPU of the graphics card of common workstations...
  7. ncbi Building the stator of the yeast vacuolar-ATPase: specific interaction between subunits E and G
    James Féthière
    Structural and Computational Biology Programme, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    J Biol Chem 279:40670-6. 2004
    ..We propose that the V-ATPase EG complex forms one of the peripheral stators similar to the one formed by the two copies of subunit b in F-ATPase...
  8. ncbi Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography
    Anja Seybert
    European Molecular Biology Laboratory (EMBL, Meyerhofstr. 1, 69117 Heidelberg, Germany
    J Struct Biol 156:342-54. 2006
    ..pneumoniae. Finally, we have evaluated the ribosome density of the organism by a template matching approach, whereby the reliability of the detection was supported by a comparative bioinformatics analysis...