Daniel Vaulot

Summary

Affiliation: Station Biologique
Country: France

Publications

  1. pmc Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean
    Xiao li Shi
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France
    PLoS ONE 6:e18979. 2011
  2. pmc Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean
    Xiao li Shi
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France
    PLoS ONE 4:e7657. 2009
  3. pmc Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling
    Daniel Vaulot
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique, Place G Tessier, Roscoff, France
    PLoS ONE 7:e39648. 2012
  4. pmc A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the Western English Channel
    Fabrice Not
    Station Biologique, UMR 7127, CNRS et Université Pierre et Marie Curie, Place George Teissier, BP74, 29682 Roscoff Cedex, France
    Appl Environ Microbiol 70:4064-72. 2004
  5. doi request reprint The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems
    Daniel Vaulot
    Station Biologique de Roscoff, UMR 7144, Centre National de la Recherche Scientifique et Université Pierre et Marie Curie, Roscoff Cx, France
    FEMS Microbiol Rev 32:795-820. 2008
  6. ncbi request reprint Eukaryotic picoplankton communities of the Mediterranean Sea in summer assessed by molecular approaches (DGGE, TTGE, QPCR)
    Dominique Marie
    Station Biologique, UMR7144 CNRS et Université Pierre et Marie Curie, Roscoff, France
    FEMS Microbiol Ecol 55:403-15. 2006
  7. pmc Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples
    Sergio Balzano
    Université Pierre and Marie Curie Paris 06 et CNRS, Station Biologique de Roscoff, Diversité du plancton océanique, Roscoff, France
    ISME J 6:1480-98. 2012
  8. ncbi request reprint Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
    Fei Zhu
    Station Biologique, UMR 7127 CNRS, INSU et Université Pierre et Marie Curie, Place George Teissier, 29680 Roscoff, France
    FEMS Microbiol Ecol 52:79-92. 2005
  9. doi request reprint Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel
    Dominique Marie
    Université Pierre et Marie Curie Paris 06 et CNRS, UMR 7144, Station Biologique, Roscoff, France
    FEMS Microbiol Ecol 72:165-78. 2010
  10. doi request reprint Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach
    Manon Viprey
    Station Biologique de Roscoff, UMR7144, CNRS et Université Pierre et Marie Curie, BP74, 29682 Roscoff Cedex, France
    Environ Microbiol 10:1804-22. 2008

Collaborators

Detail Information

Publications23

  1. pmc Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean
    Xiao li Shi
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France
    PLoS ONE 6:e18979. 2011
    ..Our data suggest that a single gene marker, even as widely used as 18S rRNA, provides a biased view of eukaryotic communities and that the use of several markers is necessary to obtain a complete image...
  2. pmc Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean
    Xiao li Shi
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique de Roscoff, Roscoff, France
    PLoS ONE 4:e7657. 2009
    ....
  3. pmc Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling
    Daniel Vaulot
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique, Place G Tessier, Roscoff, France
    PLoS ONE 7:e39648. 2012
    ..3% identical bases for the three larger chromosomes over a 360 kbp alignment). At least two to three different genotypes seemed to be present in each natural sample based on read mapping to Bathycoccus RCC1105 genome...
  4. pmc A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the Western English Channel
    Fabrice Not
    Station Biologique, UMR 7127, CNRS et Université Pierre et Marie Curie, Place George Teissier, BP74, 29682 Roscoff Cedex, France
    Appl Environ Microbiol 70:4064-72. 2004
    ..Members of the order Prasinococcales and the species Bathycoccus prasinos (Mamiellales) displayed sporadic occurrences, while the abundances of all other Prasinophyceae groups targeted remained negligible...
  5. doi request reprint The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems
    Daniel Vaulot
    Station Biologique de Roscoff, UMR 7144, Centre National de la Recherche Scientifique et Université Pierre et Marie Curie, Roscoff Cx, France
    FEMS Microbiol Rev 32:795-820. 2008
    ....
  6. ncbi request reprint Eukaryotic picoplankton communities of the Mediterranean Sea in summer assessed by molecular approaches (DGGE, TTGE, QPCR)
    Dominique Marie
    Station Biologique, UMR7144 CNRS et Université Pierre et Marie Curie, Roscoff, France
    FEMS Microbiol Ecol 55:403-15. 2006
    ..Of the three genera assessed, Bathycoccus appeared as the most abundant, forming localized maxima at depth...
  7. pmc Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples
    Sergio Balzano
    Université Pierre and Marie Curie Paris 06 et CNRS, Station Biologique de Roscoff, Diversité du plancton océanique, Roscoff, France
    ISME J 6:1480-98. 2012
    ..Moreover, in contrast to what occurs in warmer waters, most of the key pico- and nanoplankton species found in the Beaufort Sea could be successfully established in culture...
  8. ncbi request reprint Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
    Fei Zhu
    Station Biologique, UMR 7127 CNRS, INSU et Université Pierre et Marie Curie, Place George Teissier, 29680 Roscoff, France
    FEMS Microbiol Ecol 52:79-92. 2005
    ..Data interpretation must take into account primer specificity and the varying rRNA gene copy number among eukaryotes...
  9. doi request reprint Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel
    Dominique Marie
    Université Pierre et Marie Curie Paris 06 et CNRS, UMR 7144, Station Biologique, Roscoff, France
    FEMS Microbiol Ecol 72:165-78. 2010
    ..The new strategy should be very useful to conduct similar studies on other specific populations that can be discriminated by flow cytometry (e.g. red tide organisms or uncultivated protists)...
  10. doi request reprint Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach
    Manon Viprey
    Station Biologique de Roscoff, UMR7144, CNRS et Université Pierre et Marie Curie, BP74, 29682 Roscoff Cedex, France
    Environ Microbiol 10:1804-22. 2008
    ..Within genera such as Ostreococcus or Crustomastix for which several clades were observed, depth seemed to be the main factor controlling differential distribution of genotypes...
  11. ncbi request reprint Picobiliphytes: a marine picoplanktonic algal group with unknown affinities to other eukaryotes
    Fabrice Not
    Station Biologique de Roscoff, UMR 7144 CNRS and Université Pierre et Marie Curie, Boîte Postale 74, 29682 Roscoff Cedex, France
    Science 315:253-5. 2007
    ..This suggests that they may be secondary endosymbiotic algae. Pending the isolation of living cells and their formal description, these algae have been termed picobiliphytes...
  12. ncbi request reprint Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae)
    Francisco Rodriguez
    Station Biologique, UMR 7127 CNRS INSU UPMC, BP 74, 29682 Roscoff, France
    Environ Microbiol 7:853-9. 2005
    ..These features strongly suggest distinct adaptation to environmental conditions encountered at surface and the bottom of the oceanic euphotic zone, reminiscent of that described in prokaryotes...
  13. doi request reprint Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations
    Cécile Lepère
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique de Roscoff, BP74, Roscoff, France
    FEMS Microbiol Ecol 76:513-23. 2011
    ..Nonetheless, this approach appears to be suitable for obtaining metagenomics data on microbial eukaryotic communities...
  14. pmc Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry
    Isabelle C Biegala
    Station Biologique de Roscoff, UMR 7127, F 29682 Roscoff Cedex, France
    Appl Environ Microbiol 69:5519-29. 2003
    ..Picoeukaryote abundance increased from open toward more estuarine water, probably following changes in water temperature and stability...
  15. ncbi request reprint Diversity of picoplanktonic prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental samples and novel isolates retrieved from oceanic and coastal marine ecosystems
    Laure Guillou
    Institut de Ciencies del Mar, Passeig Maritim de la Barceloneta, Barcelona, Spain
    Protist 155:193-214. 2004
    ..This report of the overall diversity of picoeukaryotic prasinophytes reveals a group of ecologically important and diverse marine microorganims that are well represented by isolated cultures...
  16. ncbi request reprint Two-component systems in Prochlorococcus MED4: genomic analysis and differential expression under stress
    Isabelle Mary
    Station Biologique, UMR 7127, CNRS et Université Pierre et Marie Curie, P O Box 74, F 29682 cedex, Roscoff, France
    FEMS Microbiol Lett 226:135-44. 2003
    ..In contrast, both cold and heat shocks decreased rather than increased the expression of most hik and rer genes...
  17. doi request reprint Prasinoderma singularis sp. nov. (Prasinophyceae, Chlorophyta), a solitary coccoid Prasinophyte from the South-East Pacific Ocean
    Fabien Jouenne
    Norwegian Institute for Water Research, Gaustadalleen 21, 0349 Oslo, Norway
    Protist 162:70-84. 2011
    ..coloniale. When compared to P. coloniale, P. singularis sp. nov. is morphologically characterized by the absence of colonies, smaller cells with a thinner cell wall, and a second cell type with a different cell covering...
  18. doi request reprint Lotharella reticulosa sp. nov.: a highly reticulated network forming chlorarachniophyte from the Mediterranean Sea
    Shuhei Ota
    UPMC Paris 06 and CNRS, UMR 7144, Station Biologique de Roscoff, Place Georges Tessier, 29682 Roscoff, France
    Protist 163:91-104. 2012
    ..The unique colonization pattern and other unique features demonstrate that RCC375 is a new chlorarachniophyte belonging to genus Lotharella, which we describe as Lotharella reticulosa sp. nov...
  19. ncbi request reprint Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313
    Isabelle Mary
    Station Biologique, UMR 7127, CNRS et Université Pierre et Marie Curie, BP 74, F 29682 Roscoff Cedex, France
    Microbiology 150:1271-81. 2004
    ..Furthermore, the strongest responses were observed in Prochlorococcus MED4, a strain characteristic of the open ocean surface layer, where hsp genes could play a critical role in cell survival...
  20. ncbi request reprint Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes
    Katrin Zwirglmaier
    Department of Biological Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
    Environ Microbiol 10:147-61. 2008
    ..This clearly reiterates the idea of spatial partitioning of individual cyanobacterial lineages, but at the global scale...
  21. pmc Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea
    Nicholas J Fuller
    Department of Biological Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
    Appl Environ Microbiol 69:2430-43. 2003
    ..Genotypes corresponding to well-studied laboratory strains also appeared to be poorly represented in this stratified water column in the Red Sea...
  22. ncbi request reprint Analysis of the hli gene family in marine and freshwater cyanobacteria
    Devaki Bhaya
    Department of Plant Biology, Carnegie Institution of Washington, 260 Panama Street, Stanford, CA 94305, USA
    FEMS Microbiol Lett 215:209-19. 2002
    ..This information is discussed with respect to the role of hli genes in the acclimation of cyanobacteria to high light, and the possible relationships among members of this diverse gene family...
  23. ncbi request reprint Are autotrophs less diverse than heterotrophs in marine picoplankton?
    Daniel Vaulot
    Trends Microbiol 10:266-7. 2002