Research Topics
| J Mark CockSummaryAffiliation: Station Biologique Country: France Publications
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Detail Information
Publications
Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stressSimon M Dittami
UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
Genome Biol 10:R66. 2009..Ectocarpus siliculosus is being established as a genetic and genomic model for the brown algal lineage, but little is known about its response to abiotic stress...- Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)Simon M Dittami
UPMC Univ Paris 6, UMR 7139 Marine Plants and Biomolecules, Station Biologique, 29680 Roscoff, France
BMC Mol Biol 12:2. 2011.... - Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosusAude Le Bail
UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, F 29682, Roscoff, France
BMC Mol Biol 9:75. 2008..A series of genes that can be used to normalise expression analyses is required for these studies... - Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastidsGildas Le Corguillé
CNRS, UMR7139, Marine Plants and Biomolecules, Station Biologique, Roscoff, France
BMC Evol Biol 9:253. 2009..Large-scale genomic analyses have shown to be a powerful tool for phylogenetic reconstruction but insufficient sequence data have been available for red-algal derived plastid genomes... - HECTAR: a method to predict subcellular targeting in heterokontsBernhard Gschloessl
UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, F 29682, Roscoff, France
BMC Bioinformatics 9:393. 2008..HECTAR, a subcellular targeting prediction method which takes into account the specific properties of heterokont proteins, has been developed to address this problem... 
The Ectocarpus genome and the independent evolution of multicellularity in brown algaeJ Mark Cock
UPMC Universite Paris 6, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, Place Georges Teissier, BP74, 29682 Roscoff Cedex, France
Nature 465:617-21. 2010....- Extraction of high-quality genomic DNA from EctocarpusSusana M Coelho
UPMC Universite Paris 06, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, 29682 Roscoff Cedex, France
Cold Spring Harb Protoc 2012:365-8. 2012.... - Isolation and regeneration of protoplasts from EctocarpusSusana M Coelho
UPMC Universite Paris 06, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, 29682 Roscoff Cedex, France
Cold Spring Harb Protoc 2012:361-4. 2012.... - How to cultivate EctocarpusSusana M Coelho
UPMC Universite Paris 06, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, BP74, 29682 Roscoff Cedex, France
Cold Spring Harb Protoc 2012:258-61. 2012..All manipulations of Ectocarpus cultures should be performed in a clean environment (if possible, under a laminar flow hood). Forceps should be dipped in ethanol and allowed to dry under the hood... - Immunostaining of Ectocarpus cellsSusana M Coelho
UPMC Universite Paris 06, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, 29682 Roscoff Cedex, France
Cold Spring Harb Protoc 2012:369-72. 2012..All incubations described below are carried out on a platform shaker at room temperature. Use high-quality microscope slides to avoid imperfections in the glass that can be a problem for confocal laserscan microscopy analysis... - Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in EukaryotesGurvan Michel
UPMC University Paris 6, UMR 7139 Marine Plants and Biomolecules, Station Biologique de Roscoff, F 29682 Roscoff, Bretagne, France
New Phytol 188:67-81. 2010..The starch metabolism of the red algal endosymbiont was entirely lost in the ancestor of Stramenopiles. In light of these novel findings we question the validity of the 'Chromalveolate hypothesis'... - Genetic crosses between Ectocarpus strainsSusana M Coelho
UPMC Universite Paris 06, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, BP74, 29682 Roscoff Cedex, France
Cold Spring Harb Protoc 2012:262-5. 2012..Genetic crosses allow several classical genetic methodologies to be applied in Ectocarpus, including allelic complementation tests, backcrosses, combination of different genetic mutations, and outcrosses to create mapping populations... - Development and physiology of the brown alga Ectocarpus siliculosus: two centuries of researchBénédicte Charrier
UMR7139, Station Biologique, Centre National de la Recherche Scientifique, Université Pierre and Marie Curie Paris VI, Place Georges Teissier, 29 682 Roscoff cedex, France
New Phytol 177:319-32. 2008..In this review we look back over two centuries of work on this brown alga and highlight the advances that have led to the choice of E. siliculosus as a genomic and genetic model organism for the brown algae... - In silico survey of the mitochondrial protein uptake and maturation systems in the brown alga Ectocarpus siliculosusLudovic Delage
Universite Pierre et Marie Curie, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, Roscoff, France
PLoS ONE 6:e19540. 2011..Several of the protein import components identified in Ectocarpus, such as Tim21, Tim50 and metaxin, have also been found in other stramenopiles and this study suggests an early origin during the evolution of the eukaryotes... - Ecological and evolutionary genomics of marine photosynthetic organismsSusana M Coelho
UPMC Universite Paris 06, Station Biologique de Roscoff, Roscoff, France
Mol Ecol 22:867-907. 2013.... - Ectocarpus: a model organism for the brown algaeSusana M Coelho
UPMC Universite Paris 06, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, BP74, 29682 Roscoff Cedex, France
Cold Spring Harb Protoc 2012:193-8. 2012.... - The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in EukaryotesGurvan Michel
UPMC University Paris 6, UMR 7139 Marine Plants and Biomolecules, Station Biologique de Roscoff, F 29682 Roscoff, Bretagne, France
New Phytol 188:82-97. 2010..By contrast, the biosynthetic route for sulfated fucans is an ancestral pathway, conserved with animals. These findings shine a new light on the origin and evolution of cell wall polysaccharides in other Eukaryotes... - Copper stress proteomics highlights local adaptation of two strains of the model brown alga Ectocarpus siliculosusAndrés Ritter
Universite Pierre et Marie Curie Paris 6, Végétaux marins et biomolécules, Station Biologique, Place Georges Teissier, Roscoff, France
Proteomics 10:2074-88. 2010..siliculosus strains studied at the physiological and proteomic levels strongly suggest that persistent copper stress may represent a selective force leading to the development of strains genetically adapted to copper contaminated sites... - Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosusAkira F Peters
UPMC Universite Paris 06, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, Place Georges Teissier, BP74, 29682 Roscoff Cedex, France
Development 135:1503-12. 2008.... 
Complex life cycles of multicellular eukaryotes: new approaches based on the use of model organismsSusana M Coelho
The Marine Plants and Biomolecules Laboratory, UMR 7139 Centre National de la Recherche Scientifique and Université Pierre et Marie Curie, Station Biologique de Roscoff, Place Georges Teissier, BP74, 29682 Roscoff Cedex, France
Gene 406:152-70. 2007..Finally, we describe an emerging model organism from the brown algae, Ectocarpus siliculosus, and highlight the potential of this system for the investigation of the mechanisms that regulate complex life cycles...