Stephane Audic

Summary

Affiliation: Station Biologique
Country: France

Publications

  1. pmc The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella
    Stephane Audic
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Aix Marseille University, Institut de Microbiologie de la Mediterranee, IFR 88, Parc Scientifique de Luminy 163 Avenue de Luminy Case 934 FR 13288, Marseille Cedex 09, France
    BMC Evol Biol 11:200. 2011
  2. pmc Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
    Fabrice Armougom
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W604-8. 2006
  3. pmc mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
    Matthieu Legendre
    Structural and Genomic Information Laboratory, Centre National de la Recherche Scientifique, UPR2589, Mediterranean Institute of Microbiology IFR88, Aix Marseille University, Parc Scientifique de Luminy, FR 13288 Marseille, France
    Genome Res 20:664-74. 2010
  4. pmc The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii
    Magali Lescot
    Structural and Genomic Information Laboratory, CNRS UPR2589, IFR88, Parc Scientifique de Luminy, Marseille, France
    PLoS Genet 4:e1000185. 2008
  5. pmc Brucella microti: the genome sequence of an emerging pathogen
    Stephane Audic
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Aix Marseille University, Institut de Microbiologie de la Méditerranée IM2, IFR 88, Parc Scientifique de Luminy, FR 13288, Marseille Cedex 09, France
    BMC Genomics 10:352. 2009
  6. pmc Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell
    Peter von Dassow
    Evolution du Plancton et PaleOceans, Station Biologique de Roscoff, CNRS UPMC UMR7144, 29682 Roscoff, France
    Genome Biol 10:R114. 2009
  7. pmc PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments
    Sebastien Moretti
    Information Genomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W600-3. 2006
  8. pmc Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome
    Guillaume Blanc
    Structural and Genomic Information Laboratory, CNRS UPR 2589, Institut de Biologie Structurale et Microbiologie, IFR 88, Parc Scientifique de Luminy, 13288 Marseille Cedex 9, France
    Genome Res 17:1657-64. 2007
  9. pmc The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'
    Deborah Byrne
    Structural and Genomic Information Laboratory, CNRS UPR 2589, IFR 88, Aix Marseille University, Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France
    Genome Res 19:1233-42. 2009

Collaborators

Detail Information

Publications9

  1. pmc The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella
    Stephane Audic
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Aix Marseille University, Institut de Microbiologie de la Mediterranee, IFR 88, Parc Scientifique de Luminy 163 Avenue de Luminy Case 934 FR 13288, Marseille Cedex 09, France
    BMC Evol Biol 11:200. 2011
    ..pinnipedialis and B. ceti from marine mammals raised many questions about their origin as well as on the evolutionary history of the whole genus...
  2. pmc Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
    Fabrice Armougom
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W604-8. 2006
    ..Providing the suitable structural information is available, Expresso delivers sequence alignments with accuracy comparable with structure-based alignments. The server is available on http://www.tcoffee.org/...
  3. pmc mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
    Matthieu Legendre
    Structural and Genomic Information Laboratory, Centre National de la Recherche Scientifique, UPR2589, Mediterranean Institute of Microbiology IFR88, Aix Marseille University, Parc Scientifique de Luminy, FR 13288 Marseille, France
    Genome Res 20:664-74. 2010
    ....
  4. pmc The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii
    Magali Lescot
    Structural and Genomic Information Laboratory, CNRS UPR2589, IFR88, Parc Scientifique de Luminy, Marseille, France
    PLoS Genet 4:e1000185. 2008
    ..The correlation between gene loss and increased virulence of B. recurrentis parallels that of Rickettsia prowazekii, with both species being genomic subsets of less-virulent strains...
  5. pmc Brucella microti: the genome sequence of an emerging pathogen
    Stephane Audic
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Aix Marseille University, Institut de Microbiologie de la Méditerranée IM2, IFR 88, Parc Scientifique de Luminy, FR 13288, Marseille Cedex 09, France
    BMC Genomics 10:352. 2009
    ..The atypical phenotype of B. microti prompted us to look for genomic differences compared to other Brucella species and to look for similarities with Ochrobactrum...
  6. pmc Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell
    Peter von Dassow
    Evolution du Plancton et PaleOceans, Station Biologique de Roscoff, CNRS UPMC UMR7144, 29682 Roscoff, France
    Genome Biol 10:R114. 2009
    ..huxleyi normalized cDNA libraries to identify genes involved in important processes specific to each life phase (2N calcification or 1N motility), and to better understand the haploid phase of this prominent haplo-diplontic organism...
  7. pmc PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments
    Sebastien Moretti
    Information Genomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W600-3. 2006
    ..Protogene can handle protein fragments and will return every CDS coding for a given protein, even if they occur in different genomes. Protogene is available from http://www.tcoffee.org/...
  8. pmc Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome
    Guillaume Blanc
    Structural and Genomic Information Laboratory, CNRS UPR 2589, Institut de Biologie Structurale et Microbiologie, IFR 88, Parc Scientifique de Luminy, 13288 Marseille Cedex 9, France
    Genome Res 17:1657-64. 2007
    ..Further analysis of the genomic sequences identifies additional candidates of LGT between Rickettsia. Our study indicates that recent LGT between obligate intracellular Rickettsia is more common than previously thought...
  9. pmc The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'
    Deborah Byrne
    Structural and Genomic Information Laboratory, CNRS UPR 2589, IFR 88, Aix Marseille University, Parc Scientifique de Luminy, Case 934, 13288 Marseille Cedex 9, France
    Genome Res 19:1233-42. 2009
    ..The precise molecular mechanisms implementing the hairpin rule into the 3'-end processing of Mimivirus pre-mRNAs remain to be elucidated...