- RRTree: relative-rate tests between groups of sequences on a phylogenetic tree
Department of Zoology, Tel Aviv University, Ramat Aviv 69978, Israel Institut des Sciences de l Evolution, UniversitéMontpellier 2, 34095 Montpellier, France
Bioinformatics 16:296-7. 2000
..AVAILABILITY: The ANSI C source code of RRTree, and compiled versions for Macintosh, MS-DOS/Windows, SUN Solaris, and CGI, are freely available at http://pbil.univ-lyon1.fr/software/rrtree.html CONTACT: email@example.com..
- Euteleost fish genomes are characterized by expansion of gene families
Centre National pour la Recherche Scientifique UMR 5665, Laboratoire de Biologie Moleculaire et Cellulaire, Ecole Normale Superieure de Lyon, 46 Alleé d Italie 69364 LYON Cedex 07, France
Genome Res 11:781-8. 2001
..Redundancy appears to be the rule in fish developmental genetics. Finally, our results imply that the outcome of genome projects cannot be extrapolated easily between fish species...
- Characterization of oestrogen receptors in zebrafish (Danio rerio)
P L Bardet
Laboratoire de Biologie Moleculaire et Cellulaire, CNRS UMR 5665, Ecole Normale Superieure de Lyon, 46 allee d Italie, 69364 Lyon, France
J Mol Endocrinol 28:153-63. 2002
..After 48 h after fertilization, all ERs, but predominantly ER alpha, began to be expressed. We conclude that oestrogen signal transduction can operate during zebrafish development only within discrete time windows...
- Evidence for two distinct functional glucocorticoid receptors in teleost fish
N R Bury
INRA SCRIBE, Campus de Beaulieu, 35042 Rennes Cedex, France
J Mol Endocrinol 31:141-56. 2003
..Altogether, these results indicate that these two GR sequences encode for two functionally distinct GRs acting as ligand-inducible transcription factors in rainbow trout...
- A conserved retinoid X receptor (RXR) from the mollusk Biomphalaria glabrata transactivates transcription in the presence of retinoids
INSERM U 547, Institut Pasteur, 1 rue du Professeur Calmette, 59019-Lille, France
J Mol Endocrinol 34:567-82. 2005
..The nucleotide sequence reported in this paper has been submitted to the GenBank/EBI Data Bank with accession no. AY048663...
- One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity
G D Amoutzias
Faculty of Life Sciences, University of Manchester, United Kingdom
Mol Biol Evol 24:827-35. 2007
..In conclusion, the bZIPs are an excellent model with which to understand how DNA binding and protein interactions of TFs evolved during animal evolution...