François Pompanon

Summary

Country: France

Publications

  1. pmc Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity
    Saeid Naderi
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    PLoS ONE 2:e1012. 2007
  2. doi request reprint Who is eating what: diet assessment using next generation sequencing
    François Pompanon
    Université Grenoble 1, Laboratoire d Ecologie Alpine, CNRS, UMR 5553, Grenoble, France
    Mol Ecol 21:1931-50. 2012
  3. ncbi request reprint Genotyping errors: causes, consequences and solutions
    François Pompanon
    Laboratoire d Ecologie Alpine, UMR CNRS 5553, Universite Joseph Fourier, B P 53, 38041 Grenoble Cedex 9, France
    Nat Rev Genet 6:847-59. 2005
  4. pmc Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia
    Wasim Shehzad
    Laboratoire d Ecologie Alpine, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5553, Universite Joseph Fourier, Grenoble, France
    PLoS ONE 7:e32104. 2012
  5. doi request reprint Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan
    Wasim Shehzad
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Ecol 21:1951-65. 2012
  6. doi request reprint Evolution and taxonomy of the wild species of the genus Ovis (Mammalia, Artiodactyla, Bovidae)
    Hamid Reza Rezaei
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, B P 53, F 38041 Grenoble Cedex 9, France
    Mol Phylogenet Evol 54:315-26. 2010
  7. pmc The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals
    Saeid Naderi
    Laboratoire d Ecologie Alpine, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 9, France
    Proc Natl Acad Sci U S A 105:17659-64. 2008
  8. ncbi request reprint Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, Universite Joseph Fourier, F 38041 Grenoble Cedex 9, France
    Methods Enzymol 395:145-61. 2005
  9. doi request reprint Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies
    Pierre Taberlet
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Ecol 21:1816-20. 2012
  10. doi request reprint Towards next-generation biodiversity assessment using DNA metabarcoding
    Pierre Taberlet
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Ecol 21:2045-50. 2012

Collaborators

Detail Information

Publications21

  1. pmc Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity
    Saeid Naderi
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    PLoS ONE 2:e1012. 2007
    ..Thus studying the present genetic diversity helps to better understand the history of domestic species...
  2. doi request reprint Who is eating what: diet assessment using next generation sequencing
    François Pompanon
    Université Grenoble 1, Laboratoire d Ecologie Alpine, CNRS, UMR 5553, Grenoble, France
    Mol Ecol 21:1931-50. 2012
    ..Then, we consider both technical and analytical aspects of NGS diet studies. Finally, we discuss the validation of data accuracy including the viability of producing quantitative data...
  3. ncbi request reprint Genotyping errors: causes, consequences and solutions
    François Pompanon
    Laboratoire d Ecologie Alpine, UMR CNRS 5553, Universite Joseph Fourier, B P 53, 38041 Grenoble Cedex 9, France
    Nat Rev Genet 6:847-59. 2005
    ..We propose a protocol for estimating error rates and recommend that these measures be systemically reported to attest the reliability of published genotyping studies...
  4. pmc Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia
    Wasim Shehzad
    Laboratoire d Ecologie Alpine, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5553, Universite Joseph Fourier, Grenoble, France
    PLoS ONE 7:e32104. 2012
    ..7%). The findings of the present study will help to understand the feeding ecology of the snow leopard, as well as to address the conservation and management issues pertaining to this wild cat...
  5. doi request reprint Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan
    Wasim Shehzad
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Ecol 21:1951-65. 2012
    ..It can be applied to other carnivore species with only a slight adjustment relating to the design of the blocking oligonucleotide. It is robust and simple to implement and allows the possibility of very large-scale analyses...
  6. doi request reprint Evolution and taxonomy of the wild species of the genus Ovis (Mammalia, Artiodactyla, Bovidae)
    Hamid Reza Rezaei
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, B P 53, F 38041 Grenoble Cedex 9, France
    Mol Phylogenet Evol 54:315-26. 2010
    ..Our results show that the evolution of the genus Ovis is a striking example of successive speciation events occurring along the migration routes propagating from the ancestral area...
  7. pmc The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals
    Saeid Naderi
    Laboratoire d Ecologie Alpine, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 9, France
    Proc Natl Acad Sci U S A 105:17659-64. 2008
    ..This last domestication center is the likely origin of almost all domestic goats today. This finding is consistent with archaeological data identifying Eastern Anatolia as an important domestication center...
  8. ncbi request reprint Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, Universite Joseph Fourier, F 38041 Grenoble Cedex 9, France
    Methods Enzymol 395:145-61. 2005
    ..Finally, this chapter proposes a troubleshooting guide to help resolve the main technical difficulties encountered during the AFLP procedure...
  9. doi request reprint Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies
    Pierre Taberlet
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Ecol 21:1816-20. 2012
    ..It offers the opportunity to analyse all groups of organisms using a single sampling/extraction procedure and opens the possibility to fully standardize biodiversity surveys...
  10. doi request reprint Towards next-generation biodiversity assessment using DNA metabarcoding
    Pierre Taberlet
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Ecol 21:2045-50. 2012
    ..The near-term future of DNA metabarcoding has an enormous potential to boost data acquisition in biodiversity research...
  11. pmc An in silico approach for the evaluation of DNA barcodes
    Gentile Francesco Ficetola
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, F 38041 Grenoble Cedex 9, France
    BMC Genomics 11:434. 2010
    ..As expected, longer barcodes had a better resolution than shorter ones, which are however more convenient for ecological studies analysing environmental samples...
  12. doi request reprint DNA barcoding for ecologists
    Alice Valentini
    Laboratoire d Ecologie Alpine, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 9, France
    Trends Ecol Evol 24:110-7. 2009
    ..Even DNA-based diet composition can be estimated using fecal samples. Here we review the new avenues offered to ecologists by DNA barcoding, particularly in the context of new sequencing technologies...
  13. ncbi request reprint Speciation in the globeflower fly Chiastocheta spp. (Diptera: Anthomyiidae) in relation to host plant species, biogeography, and morphology
    Laurence Despres
    Laboratoire de Biologie des populations d Altitude, CNRS UMR 5553, Universite J Fourier, Grenoble, France
    Mol Phylogenet Evol 22:258-68. 2002
    ..6%, suggesting a recent origin of the genus and several events of diversification, involving both host shifts and within-host-plant radiation. We discuss alternative evolutionary scenarios that are consistent with molecular data...
  14. doi request reprint Universal DNA-based methods for assessing the diet of grazing livestock and wildlife from feces
    Anthony Pegard
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble Cedex 9, France
    J Agric Food Chem 57:5700-6. 2009
    ..The pyrosequencing method allowed the identification of up to 25 taxa in a diet. These methods are complementary to the chemical methods already used. They could be applied to the control of diets and the study of food preferences...
  15. ncbi request reprint Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 09, France
    Conserv Biol 21:697-708. 2007
    ..Fourth, when neutral and adaptive results conflict, additional arguments (e.g., demography, ecology, and geographic proximity) should be considered together with levels of genetic diversity to determine a conservation strategy...
  16. pmc ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
    Tiayyba Riaz
    Laboratoire d Ecologie Alpine, CNRS UMR 5553 2233, Université Joseph Fourrier, BP 53, 38041 Grenoble Cedex 9, France
    Nucleic Acids Res 39:e145. 2011
    ..These tests demonstrate the efficiency of ecoPrimers for inferring new barcodes fitting with diverse experimental contexts. ecoPrimers is available as an open source project at: http://www.grenoble.prabi.fr/trac/ecoPrimers...
  17. doi request reprint Conservation genetics of cattle, sheep, and goats
    Pierre Taberlet
    CNRS UMR 5553, Laboratoire d Ecologie Alpine, Universite Joseph Fourier, Grenoble, France
    C R Biol 334:247-54. 2011
    ..Based on sound genetic characterization, urgent conservation measures must be taken to avoid an irremediable loss of farm animal genetic resources, integrating economical, sociological, and political parameters...
  18. pmc Species detection using environmental DNA from water samples
    Gentile Francesco Ficetola
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble Cedex 09, France
    Biol Lett 4:423-5. 2008
    ..Combined with massive sequencing and the development of DNA barcodes that enable species identification, this approach opens new perspectives for the assessment of current biodiversity from environmental samples...
  19. ncbi request reprint Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria)
    Aurelie Bonin
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, Grenoble, France
    Mol Biol Evol 23:773-83. 2006
    ..Finally, we provided some preliminary insights into the genetic basis of adaptation along an altitudinal cline in the common frog...
  20. doi request reprint Evolutionary history and taxonomy of a short-horned grasshopper subfamily: the Melanoplinae (Orthoptera: Acrididae)
    Ioana C Chintauan-Marquier
    Laboratoire d Ecologie Alpine, Université Joseph Fourier UMR CNRS 5553, Grenoble Cedex 09, France
    Mol Phylogenet Evol 58:22-32. 2011
    ..The distribution of the American and Eurasiatic Melanoplinae fauna can be explained by climatic and geological events, such as the Andean uplift, that would have affected the diversification and migration of Neotropical taxa...
  21. pmc Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
    Pierre Taberlet
    Laboratoire d Ecologie Alpine, CNRS UMR 5553, Universite Joseph Fourier, BP 53, 38041 Grenoble Cedex 9, France
    Nucleic Acids Res 35:e14. 2007
    ....