Emmanuel Paradis

Summary

Country: France

Publications

  1. ncbi Analysis of comparative data using generalized estimating equations
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095, Montpellier Cedex 05, France
    J Theor Biol 218:175-85. 2002
  2. ncbi APE: Analyses of Phylogenetics and Evolution in R language
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095 Montpellier cedex 05, France
    Bioinformatics 20:289-90. 2004
  3. ncbi Can extinction rates be estimated without fossils?
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095 Montpellier cedex 05, France
    J Theor Biol 229:19-30. 2004
  4. pmc The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies
    Thomas Galewski
    Laboratoire de Paléontologie, Phylogénie et Paléobiologie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, France
    BMC Evol Biol 6:80. 2006
  5. pmc Analysis of diversification: combining phylogenetic and taxonomic data
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, 34095 Montpellier Cedex 05, France
    Proc Biol Sci 270:2499-505. 2003
  6. ncbi Statistical analysis of diversification with species traits
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie, and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095 Montpellier cedex 05, France
    Evolution 59:1-12. 2005
  7. ncbi Ecological correlates and evolutionary divergence in the skull of turtles: a geometric morphometric assessment
    Julien Claude
    Faculty of Science, Department of Biology, University of Mahasarakham, Tambon Khamriang, Kantarawichai District, Thailand
    Syst Biol 53:933-48. 2004
  8. ncbi Asymmetries in phylogenetic diversification and character change can be untangled
    Emmanuel Paradis
    Institut de Recherche pour le Developpement, UR175 CAVIAR, GAMET BP 5095, 361 Rue Jean François Breton, F 34196, Montpellier Cedex 5, France
    Evolution 62:241-7. 2008

Detail Information

Publications8

  1. ncbi Analysis of comparative data using generalized estimating equations
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095, Montpellier Cedex 05, France
    J Theor Biol 218:175-85. 2002
    ..The proposed approach performs well for the analysis of discrete characters. We illustrate our approach with some data on macro-ecological correlates in birds. Some extensions of the use of GEE are discussed...
  2. ncbi APE: Analyses of Phylogenetics and Evolution in R language
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095 Montpellier cedex 05, France
    Bioinformatics 20:289-90. 2004
    ..AVAILABILITY: The program is free and available from the official R package archive at http://cran.r-project.org/src/contrib/PACKAGES.html#ape. APE is licensed under the GNU General Public License...
  3. ncbi Can extinction rates be estimated without fossils?
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095 Montpellier cedex 05, France
    J Theor Biol 229:19-30. 2004
    ..Surprisingly, this bias was lesser with medium-sized trees. Some recommendations for interpreting results from a diversification analysis are given...
  4. pmc The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies
    Thomas Galewski
    Laboratoire de Paléontologie, Phylogénie et Paléobiologie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, France
    BMC Evol Biol 6:80. 2006
    ....
  5. pmc Analysis of diversification: combining phylogenetic and taxonomic data
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, 34095 Montpellier Cedex 05, France
    Proc Biol Sci 270:2499-505. 2003
    ..The method is compared with existing approaches that deal with incomplete phylogenies. Some applications and generalizations of the approach introduced in this paper are further discussed...
  6. ncbi Statistical analysis of diversification with species traits
    Emmanuel Paradis
    Laboratoire de Paléontologie, Paléobiologie, and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095 Montpellier cedex 05, France
    Evolution 59:1-12. 2005
    ..Within each clade the effect of body mass on speciation rate was in fact negative. The present method allows to take both effects (clade and body mass) into account simultaneously...
  7. ncbi Ecological correlates and evolutionary divergence in the skull of turtles: a geometric morphometric assessment
    Julien Claude
    Faculty of Science, Department of Biology, University of Mahasarakham, Tambon Khamriang, Kantarawichai District, Thailand
    Syst Biol 53:933-48. 2004
    ..In conclusion, the adaptive radiation of the Testudinoidea is revealed to demonstrate a clear relationship between the skull shape and life style...
  8. ncbi Asymmetries in phylogenetic diversification and character change can be untangled
    Emmanuel Paradis
    Institut de Recherche pour le Developpement, UR175 CAVIAR, GAMET BP 5095, 361 Rue Jean François Breton, F 34196, Montpellier Cedex 5, France
    Evolution 62:241-7. 2008
    ..The proper use of recently developed statistical methods may help to untangle diversification and character change, and so will allow us to address important evolutionary questions...