- adegenet: a R package for the multivariate analysis of genetic markersThibaut Jombart
Universite de Lyon, Universite Lyon 1, CNRS, UMR 5558, Laboratoire de Biometrie et Biologie Evolutive, France
Bioinformatics 24:1403-5. 2008..org/mirrors.html. Development version is available from adegenet website: http://adegenet.r-forge.r-project.org/. Both versions can be installed directly from R. adegenet is distributed under the GNU General Public Licence (v.2)...
- Revealing cryptic spatial patterns in genetic variability by a new multivariate methodT Jombart
Laboratoire de Biometrie et Biologie Evolutive, UMR CNRS 5558, Universite de Lyon, Universite Lyon 1, Villeurbanne Cedex, France
Heredity (Edinb) 101:92-103. 2008..sPCA performed better than PCA to reveal spatial genetic patterns. The proposed methodology is implemented in the adegenet package of the free software R...
- Genetic markers in the playground of multivariate analysisT Jombart
Universite de Lyon, Lyon, France
Heredity (Edinb) 102:330-41. 2009..Finally, we tackle several questions of interest in which multivariate analysis has a great role to play, such as the study of the typological coherence of different genetic markers, or the investigation of spatial genetic patterns...
- Consensus genetic structuring and typological value of markers using multiple co-inertia analysisDenis Laloé
Station de génétique quantitative et appliquée UR337, INRA, 78352 Jouy en Josas, France
Genet Sel Evol 39:545-67. 2007..Moreover, efficient markers in one collection of populations do not remain efficient in others. The number of markers used in a study is not a sufficient criterion to judge its reliability. "Quantity is not quality"...