C Plomion

Summary

Affiliation: Institut National de la Recherche Agronomique
Country: France

Publications

  1. ncbi request reprint Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots
    Christian Dubos
    Equipe de Génétique et Amélioration des Arbres Forestiers, INRA, 69 route d Arcachon, 33612 Cestas Cédex France
    Plant Mol Biol 51:249-62. 2003
  2. ncbi request reprint Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins
    Christophe Plomion
    UMR Biodiversité Gènes Communautés, INRA, Equipe de génétique, Cestas, France
    Proteomics 6:6509-27. 2006
  3. doi request reprint Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine
    Christophe Plomion
    INRA, UMR1202, BIOGECO, Cestas F 33610, France
    BMC Genomics 15:171. 2014
  4. pmc Soil water stress affects both cuticular wax content and cuticle-related gene expression in young saplings of maritime pine (Pinus pinaster Ait)
    Gregoire Le Provost
    INRA, UMR 1202, BIOGECO, F 33610, Cestas, France
    BMC Plant Biol 13:95. 2013
  5. pmc Comparative mapping in the Fagaceae and beyond with EST-SSRs
    Catherine Bodénès
    INRA, UMR1202 BIOGECO, Cestas F 33610, France
    BMC Plant Biol 12:153. 2012
  6. pmc Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing
    Saneyoshi Ueno
    Forestry and Forest Products Research Institute, Department of Forest Genetics, Tree Genetics Laboratory, 1 Matsunosato, Tsukuba, Ibaraki 305 8687 JAPAN
    BMC Genomics 14:236. 2013
  7. pmc Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers
    Marina de Miguel
    INIA CIFOR, Departamento de Ecología y Genética Forestal, Madrid, Spain
    BMC Genomics 13:527. 2012
  8. pmc High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination
    Emilie Chancerel
    INRA, UMR1202 BIOGECO, F 33610 Cestas, France
    BMC Biol 11:50. 2013
  9. pmc (Not) Keeping the stem straight: a proteomic analysis of maritime pine seedlings undergoing phototropism and gravitropism
    Raul Herrera
    INRA, UMR BioGeco 1202, 69 route d Arcachon, 33612 Cestas, France
    BMC Plant Biol 10:217. 2010
  10. pmc RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus
    Emilie Villar
    CIRAD, UMR AGAP, campus de Baillarguet TA 10C, F 34398 Montpellier cedex 5, France
    BMC Genomics 12:538. 2011

Collaborators

Detail Information

Publications39

  1. ncbi request reprint Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots
    Christian Dubos
    Equipe de Génétique et Amélioration des Arbres Forestiers, INRA, 69 route d Arcachon, 33612 Cestas Cédex France
    Plant Mol Biol 51:249-62. 2003
    ....
  2. ncbi request reprint Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins
    Christophe Plomion
    UMR Biodiversité Gènes Communautés, INRA, Equipe de génétique, Cestas, France
    Proteomics 6:6509-27. 2006
    ..Some important clues regarding the way poplar copes with water deficit were revealed...
  3. doi request reprint Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine
    Christophe Plomion
    INRA, UMR1202, BIOGECO, Cestas F 33610, France
    BMC Genomics 15:171. 2014
    ..This study aims to deepen our knowledge regarding these issues in maritime pine, the first species used for reforestation in south western Europe...
  4. pmc Soil water stress affects both cuticular wax content and cuticle-related gene expression in young saplings of maritime pine (Pinus pinaster Ait)
    Gregoire Le Provost
    INRA, UMR 1202, BIOGECO, F 33610, Cestas, France
    BMC Plant Biol 13:95. 2013
    ....
  5. pmc Comparative mapping in the Fagaceae and beyond with EST-SSRs
    Catherine Bodénès
    INRA, UMR1202 BIOGECO, Cestas F 33610, France
    BMC Plant Biol 12:153. 2012
    ..A large number of mapping populations have been developed for oak, but few gene-based markers are available for constructing integrated genetic linkage maps and comparing gene order and QTL location across related species...
  6. pmc Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing
    Saneyoshi Ueno
    Forestry and Forest Products Research Institute, Department of Forest Genetics, Tree Genetics Laboratory, 1 Matsunosato, Tsukuba, Ibaraki 305 8687 JAPAN
    BMC Genomics 14:236. 2013
    ..Total RNA was then extracted from apical buds displaying endo- and ecodormancy. This RNA was used for the generation of cDNA libraries, and in-depth transcriptome characterization was performed with 454 FLX pyrosequencing technology...
  7. pmc Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers
    Marina de Miguel
    INIA CIFOR, Departamento de Ecología y Genética Forestal, Madrid, Spain
    BMC Genomics 13:527. 2012
    ..We use different types of DNA markers, including last-generation molecular markers...
  8. pmc High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination
    Emilie Chancerel
    INRA, UMR1202 BIOGECO, F 33610 Cestas, France
    BMC Biol 11:50. 2013
    ..Such approaches are particularly useful in species with a large genome size, precluding the use of whole-genome shotgun assembly with current technologies...
  9. pmc (Not) Keeping the stem straight: a proteomic analysis of maritime pine seedlings undergoing phototropism and gravitropism
    Raul Herrera
    INRA, UMR BioGeco 1202, 69 route d Arcachon, 33612 Cestas, France
    BMC Plant Biol 10:217. 2010
    ..Phototropism and gravitropism responses enable the plant to reorient with regard to light and gravity...
  10. pmc RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus
    Emilie Villar
    CIRAD, UMR AGAP, campus de Baillarguet TA 10C, F 34398 Montpellier cedex 5, France
    BMC Genomics 12:538. 2011
    ..In this study, we compared the molecular responses of two commercial eucalyptus hybrids during the dry season. Both hybrids differ in productivity when grown under water deficit...
  11. pmc Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine
    Emilie Chancerel
    INRA, UMR1202 BIOGECO, F 33610 Cestas, France
    BMC Genomics 12:368. 2011
    ..In this paper, we evaluated the potential of highly-multiplexed SNP genotyping for genetic mapping in maritime pine (Pinus pinaster Ait.), the main conifer used for commercial plantation in southwestern Europe...
  12. pmc Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
    Patricia Faivre Rampant
    INRA, URGV, Plant Genomics Research, F 91057 Evry, France
    BMC Genomics 12:292. 2011
    ..Deep-coverage large-insert genomic libraries are a crucial tool for attaining this objective. We report herein the construction of a BAC library for Quercus robur, its characterization and an analysis of BAC end sequences...
  13. pmc A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study
    Jérôme Durand
    INRA, UMR1202 BIOGECO, F 33610 Cestas, France
    BMC Genomics 11:570. 2010
    ..We also compared the level of polymorphism between genomic and EST-derived SSRs and address the transferability of EST-SSRs in Castanea sativa (chestnut)...
  14. pmc Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak
    Saneyoshi Ueno
    INRA, UMR 1202 BIOGECO, 69 route d Arcachon, F 33612 Cestas, France
    BMC Genomics 11:650. 2010
    ....
  15. pmc Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster ait.)
    C Plomion
    Institut National de la Recherche Agronomique, Equipe de Génétique et Amélioration des Arbres Forestiers, BP45, 33610 Pierroton, France
    Plant Physiol 123:959-69. 2000
    ..The possibility of obtaining regulatory correlations and anticorrelations between proteins provide us with a new category of homology (regulatory homology) in tracing functional relationships...
  16. ncbi request reprint Advances in forest tree genomics. Forest Trees Workshop, Plant and Animal Genome XIII Conference, San Diego, CA, USA, January 2005
    Christophe Plomion
    UMR BIOGECO, INRA Equipe de Génétique, 69 route d Arcachon, 33612 Cestas Cedex, France
    New Phytol 166:713-7. 2005
  17. ncbi request reprint Cross-species transferability and mapping of genomic and cDNA SSRs in pines
    D Chagne
    UMR 1202 BIOGECO INRA, Equipe de génétique, 69 route d Arcachon, 33610, Cestas Cedex, France
    Theor Appl Genet 109:1204-14. 2004
    ..Overall, genomic SSRs tend to perform better in terms of heterozygosity and number of alleles. This study suggests that useful SSR markers can be developed from pine ESTs...
  18. ncbi request reprint Seasonal variation in transcript accumulation in wood-forming tissues of maritime pine (Pinus pinaster Ait.) with emphasis on a cell wall glycine-rich protein
    Gregoire Le Provost
    1 UMR Biogeco 1202, INRA, Equipe de génétique, 69 route d Arcachon, 33612 Cestas, Cedex, France
    Planta 217:820-30. 2003
    ..Among the genes with a known function, transcript expression and nucleotide sequence variation analysis showed a cell wall glycine-rich protein to be a strong candidate gene for wood properties...
  19. ncbi request reprint Transcriptome analysis of bud burst in sessile oak (Quercus petraea)
    Jeremy Derory
    UMR Biodiversité Gènes et Ecosystèmes, INRA, F 33612 Cestas cedex, France
    New Phytol 170:723-38. 2006
    ..These differentially expressed genes constitute relevant candidates for signaling pathway of bud burst in trees...
  20. ncbi request reprint Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings
    Christian Dubos
    Equipe de Génétique et Amélioration des Arbres Forestiers, INRA, 69 route d Arcachon, 33612 Cestas Cedex, France
    Tree Physiol 23:169-79. 2003
    ..The identification and characterization of water-stress-responsive genes provide new insights into the nature of the machinery involved in the response to water deprivation in a forest tree...
  21. ncbi request reprint Protein extraction from woody plants
    Christophe Plomion
    NRA, UMR BIOGECO, Equipe de génétique, Cestas, France
    Methods Mol Biol 355:37-41. 2007
    ..Proteins are first extracted from tissue powdered in liquid nitrogen using the TCA-acetone method and then solubilized in an optimized buffer. The resulting 2D gels can be viewed at http://cbi.labri.fr/outils/protic/index.php...
  22. ncbi request reprint Combining proteomic and genetic studies in plants
    Hervé Thiellement
    Unité Mixte de Génétique Végétale, INRA CNRS, La Ferme du Moulon, F 91190 Gif sur Yvette, France
    J Chromatogr B Analyt Technol Biomed Life Sci 782:137-49. 2002
    ..These comparisons also permit to hypothesize for "candidate proteins" that might be involved in the genetic variation of traits of economic or agronomic interest...
  23. doi request reprint Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue
    Jorge A P Paiva
    INRA, UMR 1202, Biodiversity Genes and Communities, 69 route d Arcachon, F 33610 Cestas, France
    New Phytol 178:283-301. 2008
    ..This work provides a list of candidate genes for wood properties that will be tested in forward genetics...
  24. pmc In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?
    Camille Lepoittevin
    INRA, UMR1202 BIOGECO, Cestas, France
    PLoS ONE 5:e11034. 2010
    ..This study provides an assessment of EST-derived and resequencing-derived SNP quality in maritime pine (Pinus pinaster Ait.), a conifer characterized by a huge genome size ( approximately 23.8 Gb/C)...
  25. doi request reprint Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE
    Delphine Vincent
    INRA, UMR1202 BIOGECO, F 33612 Cestas, France
    Electrophoresis 30:4118-36. 2009
    ..This is the first description of the proteome of L. maculans and L. bicolor, and the first application of liquid-phase IEF to any fungal extracts...
  26. doi request reprint A micromethod for high throughput RNA extraction in forest trees
    Gregoire Le Provost
    INRA, UMR1202 Biodiversity Genes and Communities, F 33610, Cestas
    Biol Res 40:291-7. 2007
    ..The RNA extracted is suitable for applications such as real time reverse transcription polymerase chain reaction, cDNA library construction or synthesis of complex targets for microarray analysis...
  27. ncbi request reprint Comparative mapping between quercus and castanea using simple-sequence repeats (SSRs)
    T Barreneche
    INRA, UMR Biodiversité Gènes et Ecosystèmes, 69 route d Arcachon, 33612, Cestas Cedex, Pierroton, France
    Theor Appl Genet 108:558-66. 2004
    ..Orthologous loci identified between Q. robur and C. sativa will be useful as anchor loci for comparative mapping studies within the Fagaceae family...
  28. ncbi request reprint The proteome of maritime pine wood forming tissue
    Jean Marc Gion
    UMR 1202 BIOGECO, INRA, Equipe de génétique, Cestas, France
    Proteomics 5:3731-51. 2005
    ..fr/Protic/Protic/home/index.php. Finally, the average protein amount was compared with their respective transcript abundance as quantified through EST counting in a cDNA-library constructed with mRNA extracted from wood forming tissue...
  29. ncbi request reprint Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences
    Loïck Le Dantec
    Unité de Recherche sur les Espèces Fruitières et la Vigne, INRA, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d Ornon Cedex, France
    Plant Mol Biol 54:461-70. 2004
    ..The frequency of the SNP allele was shown to be the main factor influencing the probability of SNP detection...
  30. doi request reprint Transcriptional analysis of differentially expressed genes in response to stem inclination in young seedlings of pine
    P Ramos
    Instituto Biología Vegetal y Biotecnología, Universidad de Talca, Talca, Chile
    Plant Biol (Stuttg) 14:923-33. 2012
    ..These genes may also represent relevant candidate genes involved in the gravitropic response and potentially in wood formation...
  31. doi request reprint Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season
    J A P Paiva
    INRA, UMR1202, BIOGECO, Domaine de l Hermitage, 69 route d Arcachon, F 33612 Cestas cedex, France
    New Phytol 179:1080-94. 2008
    ..This work provides new insights into the plasticity of the molecular machinery involved in wood formation, and reveals candidate genes potentially responsible for the phenotypic differences found between early- and late-wood...
  32. ncbi request reprint Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers
    S Mariette
    INRA, Equipe de Génétique et Amélioration des Arbres Forestiers, BP45, F 33610 Cestas, France
    Heredity (Edinb) 86:469-79. 2001
    ..AFLPs and microsatellites gave different population diversity rankings. Consequently, the results do not support the potential population identification within each provenance for conservation purposes...
  33. ncbi request reprint Nucleotide variation in genes involved in wood formation in two pine species
    David Pot
    UMR 1202 BIOGECO, INRA, 69 route d Arcachon, 33612 Cestas Cedex, France
    New Phytol 167:101-12. 2005
    ..pinaster. The consistency of the results obtained at the nucleotide level, together with the physiological roles of the genes analysed, indicate their potential susceptibility to artificial and/or natural selection...
  34. doi request reprint Palaeogenomics of plants: synteny-based modelling of extinct ancestors
    Michael Abrouk
    INRA, UMR 1095, Laboratoire Genetique, Diversité et Ecophysiologie des Céréales, 234 avenue du Brezet, 63100 Clermont Ferrand, France
    Trends Plant Sci 15:479-87. 2010
    ..Recent palaeogenomic data demonstrate that whole-genome duplications have provided a motor for the evolutionary success of flowering plants over the last 50-70 million years...
  35. ncbi request reprint "Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses"
    Emmanuelle Eveno
    Institut National de Recherche Agronomique, Unité Mixte de Recherche 1202 Biodiversity Genes and Communities, Cestas, France
    Mol Biol Evol 25:417-37. 2008
    ..pinaster and other related species. These genes clearly constitute relevant candidates for future association studies in P. pinaster...
  36. doi request reprint Protein polymorphism between 2 Picea abies populations revealed by 2-dimensional gel electrophoresis and tandem mass spectrometry
    Cristina Maria Valcu
    Section of Forest Genetics, Technische Universitat Munchen, Am Hochanger 13, D 85354 Freising Weihenstephan, Germany
    J Hered 99:364-75. 2008
    ..Our results show that P. abies seedlings from locally adapted ecotypes exhibit consistent differences in protein expression. The expression polymorphism of some of these proteins has potential adaptive significance...
  37. ncbi request reprint Transcriptional changes in two types of pre-mycorrhizal roots and in ectomycorrhizas of oak microcuttings inoculated with Piloderma croceum
    Patrick Frettinger
    Department of Terrestrial Ecology, University of Leipzig, Institute of Biology I, Johannisallee 21 23, 04103, Leipzig, Germany
    Planta 225:331-40. 2007
    ..Regulation of such genes could explain the increase of global resistance observed in mycorrhizal plants...
  38. ncbi request reprint PROTICdb: a web-based application to store, track, query, and compare plant proteome data
    Hélène Ferry-Dumazet
    Centre de Bioinformatique de Bordeaux, Universite Victor Segalen Bordeaux 2, France
    Proteomics 5:2069-81. 2005
    ..PROTICdb is based on the Oracle or the PostgreSQL Database Management System and is freely available upon request at the following URL: http://moulon.inra.fr/ bioinfo/PROTICdb...
  39. ncbi request reprint Proteomic analysis of differentially expressed proteins in hepatocellular carcinoma developed in patients with chronic viral hepatitis C
    Jean Frédéric Blanc
    INSERM, E362, IFR66 Bordeaux, Universite Victor Segalen Bordeaux 2, Bordeaux, France
    Proteomics 5:3778-89. 2005
    ..Variations in protein accumulation were confirmed for two selected proteins (apolipoprotein E, chloride intracellular channel 1) by Western blotting in ten additional cases of HCC developing in patients with viral hepatitis C...