Frédéric Delsuc

Summary

Country: France

Publications

  1. pmc RUNX2 tandem repeats and the evolution of facial length in placental mammals
    Marie A Pointer
    Department of Zoology, University of Cambridge, Cambridge, CB2 3EJ, UK
    BMC Evol Biol 12:103. 2012
  2. doi request reprint Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier II, Place Eugene Bataillon, Montpellier, France
    Mol Phylogenet Evol 62:673-80. 2012
  3. pmc Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny
    Tiratha Raj Singh
    Department of Zoology, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
    BMC Genomics 10:534. 2009
  4. doi request reprint Additional molecular support for the new chordate phylogeny
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR5554 CNRS, Universite Montpellier II, CC064, Place Eugene Bataillon, Montpellier Cedex 5, France
    Genesis 46:592-604. 2008
  5. pmc Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    BMC Evol Biol 4:11. 2004
  6. ncbi request reprint [Molecular dating in the genomic era]
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Phylogénie et Paléobiologie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34095 Montpellier Cedex 05, France
    Med Sci (Paris) 22:374-80. 2006
  7. doi request reprint Accelerated evolutionary rate of housekeeping genes in tunicates
    Georgia Tsagkogeorga
    Université Montpellier 2 and CNRS, Institut des Sciences de l Evolution UMR 5554, CC064, Place Eugene Bataillon, 34095, Montpellier Cedex 05, France
    J Mol Evol 71:153-67. 2010
  8. doi request reprint Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals
    Jonathan Romiguier
    CNRS, Universite Montpellier, Institut des Sciences de l Evolution, Montpellier, France
    Mol Biol Evol 30:2134-44. 2013
  9. pmc An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models
    Georgia Tsagkogeorga
    Universite Montpellier 2, Institut des Sciences de l Evolution UMR 5554, CC064, Place Eugene Bataillon, 34095 Montpellier Cedex 05, France
    BMC Evol Biol 9:187. 2009
  10. ncbi request reprint Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34 095 Montpellier Cedex 05, France
    J Mol Evol 57:S201-13. 2003

Collaborators

Detail Information

Publications24

  1. pmc RUNX2 tandem repeats and the evolution of facial length in placental mammals
    Marie A Pointer
    Department of Zoology, University of Cambridge, Cambridge, CB2 3EJ, UK
    BMC Evol Biol 12:103. 2012
    ..Notably, in domestic breeds of dog, and in carnivorans in general, the ratio of glutamines to alanines is strongly correlated with facial length...
  2. doi request reprint Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier II, Place Eugene Bataillon, Montpellier, France
    Mol Phylogenet Evol 62:673-80. 2012
    ..Their phylogenetic distinctiveness and rarity in the wild argue in favor of high conservation priority...
  3. pmc Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny
    Tiratha Raj Singh
    Department of Zoology, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
    BMC Genomics 10:534. 2009
    ..This peculiar evolutionary dynamics has hampered the reconstruction of tunicate phylogenetic relationships within chordates based on mitogenomic data...
  4. doi request reprint Additional molecular support for the new chordate phylogeny
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR5554 CNRS, Universite Montpellier II, CC064, Place Eugene Bataillon, Montpellier Cedex 5, France
    Genesis 46:592-604. 2008
    ..The implications of these phylogenetic results for interpreting chordate evolution are discussed in light of recent advances from evolutionary developmental biology and genomics...
  5. pmc Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    BMC Evol Biol 4:11. 2004
    ....
  6. ncbi request reprint [Molecular dating in the genomic era]
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Phylogénie et Paléobiologie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34095 Montpellier Cedex 05, France
    Med Sci (Paris) 22:374-80. 2006
    ..Among mammals, the initial diversification of major placental groups may have taken place around 100 Mya, well before the Cretaceous/Tertiary boundary marking the extinction of dinosaurs...
  7. doi request reprint Accelerated evolutionary rate of housekeeping genes in tunicates
    Georgia Tsagkogeorga
    Université Montpellier 2 and CNRS, Institut des Sciences de l Evolution UMR 5554, CC064, Place Eugene Bataillon, 34095, Montpellier Cedex 05, France
    J Mol Evol 71:153-67. 2010
    ....
  8. doi request reprint Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals
    Jonathan Romiguier
    CNRS, Universite Montpellier, Institut des Sciences de l Evolution, Montpellier, France
    Mol Biol Evol 30:2134-44. 2013
    ..We argue that the GC content-because it is a reliable indicator of the long-term recombination rate-is an informative criterion that could help in identifying the most reliable molecular markers for species tree inference. ..
  9. pmc An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models
    Georgia Tsagkogeorga
    Universite Montpellier 2, Institut des Sciences de l Evolution UMR 5554, CC064, Place Eugene Bataillon, 34095 Montpellier Cedex 05, France
    BMC Evol Biol 9:187. 2009
    ..Nonetheless, substantial uncertainty remains about the phylogenetic relationships and taxonomic status of key groups such as the Aplousobranchia, Appendicularia, and Thaliacea...
  10. ncbi request reprint Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34 095 Montpellier Cedex 05, France
    J Mol Evol 57:S201-13. 2003
    ..Global clocks, local clocks, and quartet dating analyses suggested a Late Cretaceous origin of the crown placental clades followed by a Tertiary radiation of some placental orders like rodents...
  11. doi request reprint Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)
    Fidel Botero-Castro
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France
    Mol Phylogenet Evol 69:728-39. 2013
    ..Our results illustrate the potential of the NGS mitogenomic approach for resolving the evolutionary history of phyllostomid bats based on a denser species sampling. ..
  12. ncbi request reprint Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Mol Phylogenet Evol 28:261-75. 2003
    ..However, low statistical support values associated with almost equal distributions of apomorphies among alternatives suggested that two parallel events of rapid speciation occurred within these two armadillo subfamilies...
  13. ncbi request reprint OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals
    Emmanuel J P Douzery
    Institut des Sciences de l Evolution de Montpellier ISE M, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France
    Mol Biol Evol 31:1923-8. 2014
    ..OrthoMaM is available for browsing, query and complete or filtered downloads at http://www.orthomam.univ-montp2.fr/. ..
  14. pmc The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?
    Emmanuel J P Douzery
    Department of Paleontology, Phylogeny, and Paleobiology, Institut des Sciences de l Evolution Unité Mixte de Recherche 5554, Centre National de la Recherche Scientifique, Universite Montpellier II, Montpellier Cedex 5, France
    Proc Natl Acad Sci U S A 101:15386-91. 2004
    ....
  15. pmc PhyloExplorer: a web server to validate, explore and query phylogenetic trees
    Vincent Ranwez
    Institut des Sciences de l Evolution ISEM, UMR 5554 CNRS, Universite Montpellier II, Place E, Bataillon 34095 Montpellier Cedex 05, France
    BMC Evol Biol 9:108. 2009
    ..Moreover, although several databases of phylogenetic trees exist, there is currently no easy way to find trees that are both relevant and complementary to a given collection of trees...
  16. doi request reprint Fossil rhabdoviral sequences integrated into arthropod genomes: ontogeny, evolution, and potential functionality
    Philippe Fort
    Centre de Recherche de Biochimie Macromoleculaire, UMR 5237, CNRS, Universités Montpellier 2 et 1, Montpellier, France
    Mol Biol Evol 29:381-90. 2012
    ..They also suggest that like retroviruses, integrated rhabdoviral sequences may participate actively in the evolution of their hosts...
  17. pmc MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons
    Vincent Ranwez
    Institut des Sciences de l Evolution, UMR5554 CNRS, Universite Montpellier II, Montpellier, France
    PLoS ONE 6:e22594. 2011
    ..MACSE is distributed as an open-source java file executable with freely available source code and can be used via a web interface at: http://mbb.univ-montp2.fr/macse...
  18. pmc OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics
    Vincent Ranwez
    Universite Montpellier 2, CC064, Place Eugene Bataillon, 34 095 Montpellier Cedex 05, France
    BMC Evol Biol 7:241. 2007
    ..Genomic data now provide the opportunity to select new markers that are potentially relevant for further resolving branches of the mammalian phylogenetic tree at various taxonomic levels...
  19. pmc Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
    Ylenia Chiari
    Institut des Sciences de l Evolution, UMR5554 CNRS IRD, Universite Montpellier 2, Montpellier, France
    BMC Biol 10:65. 2012
    ..Genome-scale data have been shown to be useful in resolving other debated phylogenies, but no such adequate dataset is yet available for amniotes...
  20. ncbi request reprint Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Mol Biol Evol 19:1656-71. 2002
    ..By resampling taxa within Xenarthra, the conservative Shimodaira-Hasegawa likelihood-based test of alternative topologies was shown to be sensitive to both character and taxon sampling...
  21. ncbi request reprint Convergence of gut microbiomes in myrmecophagous mammals
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, 80309, USA BioFrontiers Institute, University of Colorado, Boulder, CO, 80309, USA
    Mol Ecol 23:1301-17. 2014
    ..This study sets the scene for future metagenomic studies aiming at evaluating potential convergence in functional gene content in the microbiomes of specialized mammalian myrmecophages...
  22. doi request reprint Diversification of Wolbachia endosymbiont in the Culex pipiens mosquito
    Celestine M Atyame
    Institut des Sciences de l Evolution, CNRS, UMR5554, Universite Montpellier 2, Place Eugene Bataillon, Montpellier, France
    Mol Biol Evol 28:2761-72. 2011
    ..In addition, multiple signatures of recombination were found in most wPip genomic regions, leading us to conclude that the mosaic nature of wPip genomes may play a key role in their evolution...
  23. doi request reprint Estimating maximum likelihood phylogenies with PhyML
    Stephane Guindon
    Laboratoire d Informatique, de Robotique et de Microélectronique de Montpellier LIRMM, UMR 5506 CNRS, Universite Montpellier II, Montpellier, France
    Methods Mol Biol 537:113-37. 2009
    ..We illustrate the strengths and pitfalls of this program through the analysis of a real data set. PhyML v3.0 is available from (http://atgc_montpellier.fr/phyml/)...
  24. doi request reprint Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae)
    Najla Dsouli
    Centre d Ecologie fonctionnelle et évolutive UMR 5175 CEFE, Université Montpellier 3 Route de Mende, Montpellier Cedex 5, France
    Infect Genet Evol 11:663-70. 2011
    ....