Xavier Argout

Summary

Affiliation: Campus International de Baillarguet
Country: France

Publications

  1. pmc Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L
    Mathilde Allegre
    CIRAD, UMR 1334 AGAP, TA 108 03 34398, Montpellier Cedex 5, France
    DNA Res 19:23-35. 2012
  2. doi request reprint The genome of Theobroma cacao
    Xavier Argout
    Centre de coopération Internationale en Recherche Agronomique pour le Développement CIRAD Biological Systems Department Unité Mixte de Recherche Développement et Amélioration des Plantes UMR DAP TA A 96 03 34398, Montpellier, France
    Nat Genet 43:101-8. 2011
  3. pmc Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions
    Xavier Argout
    Biological Systems Department, UMR DAP TA 40 03, CIRAD, Montpellier, France
    BMC Genomics 9:512. 2008
  4. pmc Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance
    Javier Terol
    Centro de Genomica, Instituto Valenciano de Investigaciones Agrarias, Carretera Moncada, Náquera, km, 4, 5 Moncada Valencia E46113, Spain
    BMC Genomics 8:31. 2007
  5. ncbi request reprint The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness
    Virginie Gébelin
    CIRAD, UMR AGAP, F 34398 Montpellier, France
    Tree Physiol 33:1084-98. 2013
  6. pmc The banana genome hub
    Gaetan Droc
    CIRAD, UMR AGAP, Montpellier F 34398, France
    Database (Oxford) 2013:bat035. 2013
  7. pmc Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing
    Cuifang Duan
    CIRAD, UMR AGAP, Montpellier, France
    BMC Genomics 14:30. 2013
  8. pmc Insight into the wild origin, migration and domestication history of the fine flavour Nacional Theobroma cacao L. variety from Ecuador
    Rey Gaston Loor Solorzano
    UMR AGAP, CIRAD, Montpellier, France
    PLoS ONE 7:e48438. 2012
  9. pmc A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas
    Isabelle Hippolyte
    CIRAD, UR Multiplication Végétative, Av, Agropolis, 34398 Montpellier Cedex 5, France
    BMC Plant Biol 10:65. 2010
  10. pmc Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets
    Virginie Gébelin
    CIRAD, UMR AGAP, F 34398 Montpellier, France
    BMC Plant Biol 12:18. 2012

Collaborators

Detail Information

Publications13

  1. pmc Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L
    Mathilde Allegre
    CIRAD, UMR 1334 AGAP, TA 108 03 34398, Montpellier Cedex 5, France
    DNA Res 19:23-35. 2012
    ..This high-density map and the set of new genetic markers identified in this study are a milestone in cocoa genomics and for marker-assisted breeding. The data are available at http://tropgenedb.cirad.fr...
  2. doi request reprint The genome of Theobroma cacao
    Xavier Argout
    Centre de coopération Internationale en Recherche Agronomique pour le Développement CIRAD Biological Systems Department Unité Mixte de Recherche Développement et Amélioration des Plantes UMR DAP TA A 96 03 34398, Montpellier, France
    Nat Genet 43:101-8. 2011
    ..cacao improvement. Based on the inferred paleohistory of the T. cacao genome, we propose an evolutionary scenario whereby the ten T. cacao chromosomes were shaped from an ancestor through eleven chromosome fusions...
  3. pmc Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions
    Xavier Argout
    Biological Systems Department, UMR DAP TA 40 03, CIRAD, Montpellier, France
    BMC Genomics 9:512. 2008
    ..An international collaboration was formed to develop an EST genomic resource database for cacao...
  4. pmc Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance
    Javier Terol
    Centro de Genomica, Instituto Valenciano de Investigaciones Agrarias, Carretera Moncada, Náquera, km, 4, 5 Moncada Valencia E46113, Spain
    BMC Genomics 8:31. 2007
    ..Aside from disease resistance, major commercial traits in Citrus are improved fruit quality, higher yield and tolerance to environmental stresses, especially salinity...
  5. ncbi request reprint The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness
    Virginie Gébelin
    CIRAD, UMR AGAP, F 34398 Montpellier, France
    Tree Physiol 33:1084-98. 2013
    ..This study revealed a small RNA-specific signature of TPD-affected trees. Both RNA degradation and a shift in miRNA biogenesis are suggested to explain the general decline in small RNAs and, particularly, in miRNAs. ..
  6. pmc The banana genome hub
    Gaetan Droc
    CIRAD, UMR AGAP, Montpellier F 34398, France
    Database (Oxford) 2013:bat035. 2013
    ..Overall, with this collaborative effort, we discuss the importance of the interoperability toward data integration between existing information systems. Database URL: http://banana-genome.cirad.fr/..
  7. pmc Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing
    Cuifang Duan
    CIRAD, UMR AGAP, Montpellier, France
    BMC Genomics 14:30. 2013
    ..This study set out to sequence transcript expressed in various tissues using next-generation sequencing and to identify AP2/ERF superfamily in the rubber tree...
  8. pmc Insight into the wild origin, migration and domestication history of the fine flavour Nacional Theobroma cacao L. variety from Ecuador
    Rey Gaston Loor Solorzano
    UMR AGAP, CIRAD, Montpellier, France
    PLoS ONE 7:e48438. 2012
    ....
  9. pmc A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas
    Isabelle Hippolyte
    CIRAD, UR Multiplication Végétative, Av, Agropolis, 34398 Montpellier Cedex 5, France
    BMC Plant Biol 10:65. 2010
    ..The present study aims at producing a saturated linkage map of M. acuminata, taking into account hypotheses on the structural heterozygosity of the parents...
  10. pmc Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets
    Virginie Gébelin
    CIRAD, UMR AGAP, F 34398 Montpellier, France
    BMC Plant Biol 12:18. 2012
    ..This study set out to identify abiotic stress-related miRNAs in Hevea using next-generation sequencing and bioinformatic analysis...
  11. doi request reprint BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution
    Alexis Dereeper
    Institut de recherche pour le developpement IRD, UMR RPB CIRAD, IRD, UM2, BP 64501, 34394, Montpellier Cedex 5, France
    Plant Mol Biol 83:177-89. 2013
    ..BESs constitute valuable resources for the first genome wide survey of coffee and provide new insights into the composition and evolution of the coffee genome. ..
  12. pmc SAT, a flexible and optimized Web application for SSR marker development
    Alexis Dereeper
    CIRAD, UMR DAP, TA A 96 03, Avenue Agropolis, Montpellier, France
    BMC Bioinformatics 8:465. 2007
    ..However, designing optimal SSR markers from bulk sequence data is a laborious and time-consuming process...
  13. doi request reprint Differential gene expression in different types of Hevea brasiliensis roots
    Riza Arief Putranto
    CIRAD, UMR DAP, F 34398 Montpellier, France
    Plant Sci 183:149-58. 2012
    ..Our results suggest that the regulation of gene expression in lateral roots is different than that in taproots, which have a main role in nutrient uptake and transport, respectively...